PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_009595582.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 1099aa MW: 122899 Da PI: 8.2154

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.4e-08	5	40	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+ + Rt +++ XP_009595582.1 5 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 40 7***************99.****998.7887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.689	1	54	IPR017884	SANT domain
SMART	SM00717	1.7E-4	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.01E-9	4	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-4	5	40	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-6	5	41	IPR001005	SANT/Myb domain
CDD	cd00167	6.94E-6	5	40	No hit	No description
SMART	SM01135	2.5E-58	593	694	IPR033471	DIRP domain
Pfam	PF06584	1.7E-33	593	693	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
MLGPEWSEED LTRFYQAYRK YGKDWKKVAA AVKPRTSEMV EALYMMNRAY LSLPEGTASV 60 VGLIAMMTDH YCNLAASDSE QESNEDAGTS RKPQKRARGK VQPNISKASE MTSPTLAASH 120 GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SCGNPKGEKY FSPSRQSLKL QADDTDDDVK 180 IALVLTEASQ RGGSPQVSQT PNRRTDSAMS SPVETAERKR VKIGMGNAKL LSNEVDEEEG 240 SMEADTGELL RYKTDLVETG TFGRTAQKGR RPYGKKLEID DSGANHFDDI KEACSGTEEG 300 QILGVVRGKL EMEATYEKNS RTSLQGPRKR SKKVLFSRDE SSAFDALQTL ADMSLMMPTA 360 ENEDESMIQF NDEIDDHVDE SGSLEAVPAN RQRDKRGSGG VRSRWSQPLS KFEVASTTKS 420 KHGKVTSTDV SAVPETKQAR RAHKAMSSKA RKTEGHVNNN NVTGSEEAEA KEASKKSTNK 480 GKRSYRSASP KLIKDQEPSS CADPRTERSD SAQSAAEIPV ANQVNLPTKV RSRRKMDLKK 540 PQRQKDLKIP DKSLDDTSAS FTALHDRAFS LKEKISNCLS NHQVRRWCTY EWFYSAIDYP 600 WFAKRDFVEY LNHVGLGHVP RLTRVEWGVI RSSLGKPRRF SEQFLNEEKE KLNQYRESVR 660 THYTELREGT REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSVLTVDRSR CRVQFDRPEL 720 GVEFVMDIDC MPLNPFENMP TLLTRRADAV DKFFESFNEL KVNARANEYM KFPACDNMEN 780 GNVFSHFSPP SHPISDLLKQ TKVASAEVDM QSRSGVMETA TYQSMAYSKS SGVAQIQAKE 840 ADVQALAELA RALDKKEAVV SELRRMNDDV LENQKSNDCS LKDSEPFKKQ YAAMLIQLNE 900 VNEEVSCALY RLRQRNTYQG SIPLAFPRPV PNFADPSTLS TFDRCTSQPQ ESGFLVNEII 960 ESSKIKARTM VDAAVQAMLS LTDRDNTTEK IEEAIGFVND RIPLDDSCMP TQPTDPKSKN 1020 MSDKNEAEIP SELITKCVAT LLMIQKCSER QFPPADVAKV LDSAVASLQP CCSQNFPIYA 1080 EIQQCMGIIR NQILALVPM

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

MLGPEWSEED LTRFYQAYRK YGKDWKKVAA AVKPRTSEMV EALYMMNRAY LSLPEGTASV  60
VGLIAMMTDH YCNLAASDSE QESNEDAGTS RKPQKRARGK VQPNISKASE MTSPTLAASH  120
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SCGNPKGEKY FSPSRQSLKL QADDTDDDVK  180
IALVLTEASQ RGGSPQVSQT PNRRTDSAMS SPVETAERKR VKIGMGNAKL LSNEVDEEEG  240
SMEADTGELL RYKTDLVETG TFGRTAQKGR RPYGKKLEID DSGANHFDDI KEACSGTEEG  300
QILGVVRGKL EMEATYEKNS RTSLQGPRKR SKKVLFSRDE SSAFDALQTL ADMSLMMPTA  360
ENEDESMIQF NDEIDDHVDE SGSLEAVPAN RQRDKRGSGG VRSRWSQPLS KFEVASTTKS  420
KHGKVTSTDV SAVPETKQAR RAHKAMSSKA RKTEGHVNNN NVTGSEEAEA KEASKKSTNK  480
GKRSYRSASP KLIKDQEPSS CADPRTERSD SAQSAAEIPV ANQVNLPTKV RSRRKMDLKK  540
PQRQKDLKIP DKSLDDTSAS FTALHDRAFS LKEKISNCLS NHQVRRWCTY EWFYSAIDYP  600
WFAKRDFVEY LNHVGLGHVP RLTRVEWGVI RSSLGKPRRF SEQFLNEEKE KLNQYRESVR  660
THYTELREGT REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSVLTVDRSR CRVQFDRPEL  720
GVEFVMDIDC MPLNPFENMP TLLTRRADAV DKFFESFNEL KVNARANEYM KFPACDNMEN  780
GNVFSHFSPP SHPISDLLKQ TKVASAEVDM QSRSGVMETA TYQSMAYSKS SGVAQIQAKE  840
ADVQALAELA RALDKKEAVV SELRRMNDDV LENQKSNDCS LKDSEPFKKQ YAAMLIQLNE  900
VNEEVSCALY RLRQRNTYQG SIPLAFPRPV PNFADPSTLS TFDRCTSQPQ ESGFLVNEII  960
ESSKIKARTM VDAAVQAMLS LTDRDNTTEK IEEAIGFVND RIPLDDSCMP TQPTDPKSKN  1020
MSDKNEAEIP SELITKCVAT LLMIQKCSER QFPPADVAKV LDSAVASLQP CCSQNFPIYA  1080
EIQQCMGIIR NQILALVPM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-115	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3X518	0.0	A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]