PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595406.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 322aa    MW: 35654.7 Da    PI: 9.02
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08263304443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      WT  Ed+ l++a k ++++   +W++Ia+ ++ gR+   c  r
   XP_009595406.1 263 WTSGEDLALLNALKTFPKDvamRWEKIAAAVP-GRSKAACMKR 304
                      ********************************.*******988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011167220IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-5169207IPR009057Homeodomain-like
PROSITE profilePS500905.529169204IPR017877Myb-like domain
CDDcd001670.0015170217No hitNo description
Gene3DG3DSA:1.10.10.603.6E-8253314IPR009057Homeodomain-like
PROSITE profilePS500907.155255304IPR017877Myb-like domain
SuperFamilySSF466894.68E-10259306IPR009057Homeodomain-like
SMARTSM007172.7E-5259311IPR001005SANT/Myb domain
PfamPF002495.0E-7263304IPR001005SANT/Myb domain
CDDcd001673.36E-7263309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFLDEDSRP RFLLQSKPLQ QSNSDPETPT RSLCRPGIII SISLSLLFFA LSFLYFTIEP  60
FGSLLIWLSL SLLIGPFAPL SVTAGDIRVG LGPPIQDPPK DELSDSEPDA KKPNRRSNRP  120
TKKVVDFEPV LPEKVNGSVA NSEKINGSVA NSVKINGSVA NLEKINGSSE WSEGDEELLR  180
KMMGKHPVGK PGRWEAIAEG FNGRYRVENV IKKAKELGEK KMSDEDSYQR FLKDRKAVDK  240
RSESGNEDDS ENVEVKKVVE SGWTSGEDLA LLNALKTFPK DVAMRWEKIA AAVPGRSKAA  300
CMKRMTVLKK DFRSSKSANA EA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595406.10.0PREDICTED: uncharacterized protein F54F2.9
SwissprotQ9ASQ23e-71MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A1S4BC770.0A0A1S4BC77_TOBAC; uncharacterized protein F54F2.9-like
STRINGXP_009595406.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.14e-69MYB_related family protein