PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009595152.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 20989.5 Da PI: 9.7027

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009595152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.2	1.9e-17	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie++ r+ tfskRr g+ KKA+EL LCd+++ +++fs+tgk + XP_009595152.1 15 KKIESEDDRYATFSKRRSGLYKKASELVKLCDVDIGIVLFSPTGKPF 61 68******************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.198	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.1E-23	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-24	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-22	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEGKKTRGRQ KIPMKKIESE DDRYATFSKR RSGLYKKASE LVKLCDVDIG IVLFSPTGKP 60 FSFFHPTSEA IIDRFFNPNT QLSESTRLVA AHARNKVNQL NNRREVFDNI KEVASAHALL 120 LDKTKESGQK YWWDSIEQFN ADEVTKFEDW LSTSIFNMNN RLKQLENGAS SSSSSSSQAS 180 LENN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595152.1	1e-135	PREDICTED: agamous-like MADS-box protein AGL29
Refseq	XP_016446657.1	1e-135	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3Y447	1e-133	A0A1S3Y447_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009595152.1	1e-134	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-29	AGAMOUS-like 61