PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594898.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 416aa    MW: 45654.9 Da    PI: 6.1848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-063063441154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_009594898.1 306 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 344
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.595295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11305357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-6305348No hitNo description
Gene3DG3DSA:4.10.280.103.3E-9305357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008306350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAEEFQLGNG NWWDNTSISR NSTPTAASTT ISNMSSNYSN WQNTETQVDI KPRTFLNSGS  60
VLSESSGGGS GGGGGGGSRG VLSGDNNFQM MGLGLTSQPH EWNQSLLRGE KAESGFSSIL  120
QQEDLSSNNT NNYQLEASNS QQDHHWNRQK IYSGNSEDSS SVDDYKQMNF VYNINPSNNY  180
GLSQESAAQD NHVMHSSTTS SWSKFPQLLR TSPPGQQPLP PPPHSQLHFS NNTPFWNASA  240
AAMNDVPSSL FPSNLHPQLP IPTVDEKTKN TGEIRDINRM SKKTSSEISN KRPRDETPSP  300
LPAFKVRKEK MGDRITALQQ LVSPFGKTDT ASVLSEAIEY IKFLHDQIGA LSAPYMKSGS  360
SAMQHQQSNN KSEDAEGRNQ DLRSRGLCLV PVSSTFPVTN ETTVDFWTPT FGGTFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16577SGGGSGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594898.10.0PREDICTED: transcription factor bHLH123-like isoform X1
RefseqXP_016486152.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLA0A1S4BBA60.0A0A1S4BBA6_TOBAC; transcription factor bHLH123-like
STRINGXP_009594898.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-68bHLH family protein