 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009594882.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
C3H |
| Protein Properties |
Length: 340aa MW: 38287.5 Da PI: 6.8896 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009594882.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 48.4 | 1.5e-15 | 265 | 289 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ +++tGtC+yG++C+FaHg
XP_009594882.1 265 KTELCNKWQETGTCPYGENCQFAHG 289
9***********************8 PP
|
| 2 | zf-CCCH | 19.4 | 1.9e-06 | 302 | 327 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr +++ C+yG rC+F H+
XP_009594882.1 302 YKTEVCRMVLAGDMCPYGHRCHFRHS 327
9**********55**********998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
| GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
| GO:0003729 | Molecular Function | mRNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MQNENPSSDG LNSSTADAAA VPSGNKNYTC SDATSPHLAH NPFLSPTSTH QFDSSEFTPN 60
FYSTFSRSSN SPSLTSFDDI DDIATDGRLH QASYILEYQQ LYNRYTLCLA HLQESIKEVE 120
ALHQENESLR LVNSDLDRRL SLLTQATIQN CLLSDFNRFG LGVNRDSQIS DPRPPNIRPA 180
NVTEPNRPER RNVERVSLPK SISVRSSGYL KLKAQGGKNE GPSQGKTRQK ATNPPLSESQ 240
RVYVPGSKKE EEAVEFEVYN QGMLKTELCN KWQETGTCPY GENCQFAHGI TELRPVIRHP 300
RYKTEVCRMV LAGDMCPYGH RCHFRHSLTE EERRLGPSLF
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215354 | 0.0 | AC215354.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011O23, complete sequence. |
| GenBank | AC215411 | 0.0 | AC215411.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0180C05, complete sequence. |
| GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
