PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 353aa MW: 40578.5 Da PI: 4.482 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 106.3 | 1.9e-33 | 49 | 150 | 2 | 99 |
NF-YC 2 lksfwekqie...katdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l fw++q+e +a+++k ++elPlari++ +k++++vkm+sa++ vl++ka e+filelt r+w++ae+ krrtlk+ dia a+ + + dfl XP_009594862.1 49 LLCFWKQQVEeilQASELKkKQELPLARIRRAIKSNDQVKMVSAHSIVLFAKATEMFILELTHRAWMQAEQVKRRTLKRYDIARAIRNEELLDFL 143 568*****762225677875789************************************************************************ PP NF-YC 93 vdivprd 99 divp + XP_009594862.1 144 CDIVPLQ 150 ****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.01E-21 | 67 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-13 | 70 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-27 | 72 | 148 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEFPKSSSAL SSEMQKPVGI HSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVEEI 60 LQASELKKKQ ELPLARIRRA IKSNDQVKMV SAHSIVLFAK ATEMFILELT HRAWMQAEQV 120 KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKFQVEEAN YGQGNEFHPA YQMVQPINFP 180 NLQYQFQVEE EANDGQGNEF HPAYEMLQLQ PNNIPLQYQF QVEEESLDVQ GNEFHQSYQM 240 VQPNNIPLQQ QNQFQVEEEA NDGQGNDFLA AYQMVQPNDV PLQYQFQVEE EANGGEGNQF 300 HQAYQMVQPN NIPASFTSIQ GIPAPLMLPP AINSSAEAEF SSDGFALDNK EGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 3e-24 | 46 | 148 | 16 | 118 | HapE |
4g92_C | 3e-24 | 46 | 148 | 16 | 118 | HapE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016495181.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016495182.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016495184.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016495185.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
Refseq | XP_016495186.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
TrEMBL | A0A1S4C209 | 0.0 | A0A1S4C209_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X1 | ||||
STRING | XP_009594862.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13918 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 2e-31 | nuclear factor Y, subunit C4 |