PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594711.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 271aa    MW: 31447.1 Da    PI: 5.4249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
   XP_009594711.1 20 KGAWSPEEDQKLKTYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWVNYL 67
                     79******************99************************97 PP
2Myb_DNA-binding38.92e-1273118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++  eE e+ v+  ++lG++ W++Ia++++ gRt++++k++++++l
   XP_009594711.1  73 RGPFIMEEVEIVVKTYQELGNR-WSAIAARLP-GRTDNEVKNFFHTHL 118
                      5677779***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2851571IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-211569IPR009057Homeodomain-like
SuperFamilySSF466891.33E-2718114IPR009057Homeodomain-like
SMARTSM007174.4E-121969IPR001005SANT/Myb domain
PfamPF002493.7E-132067IPR001005SANT/Myb domain
CDDcd001672.65E-92267No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2270122IPR009057Homeodomain-like
SMARTSM007171.2E-972120IPR001005SANT/Myb domain
PROSITE profilePS5129414.77472122IPR017930Myb domain
PfamPF002491.4E-1073118IPR001005SANT/Myb domain
CDDcd001672.72E-779118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPRLPPQQQQ KSTNMEEIKK GAWSPEEDQK LKTYIMRYGI WNWSHMPKFA GLSRTGKSCR  60
LRWVNYLSPD VKRGPFIMEE VEIVVKTYQE LGNRWSAIAA RLPGRTDNEV KNFFHTHLKK  120
HLGVLKSTTR ARSNKRALKK TKGNADKQSP DVSSSDSSSI VTCEENKVNE NQTMGVSMNL  180
SQTYQDWFNI VDQPNIEMEI SPVILESNPD DGGTYDSNCQ QLHDQFEHSD EYVSEYYSSF  240
NSIDQFDMSS FWFDELWDVE TSDFLRDVIT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241712024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-35HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-35HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594711.10.0PREDICTED: trichome differentiation protein GL1-like isoform X3
TrEMBLA0A1S3Y1D60.0A0A1S3Y1D6_TOBAC; trichome differentiation protein GL1-like
STRINGXP_009594711.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-46myb domain protein 15