PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594550.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 265aa    MW: 28795.5 Da    PI: 6.8876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.5e-08161205554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er RR+ri +++  L+e +P++      K + a++L +  +Y+k L
  XP_009594550.1 161 HGIAERLRRERISERIKALQEPVPSC-----NKTDRAAMLDEILDYVKFL 205
                     7799*********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.90E-10154210No hitNo description
PROSITE profilePS5088814.786156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-14159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5161205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
IPLFSFPLKI SGKAINPPEG YAAGDDFLEQ ILAIPSYSSL PLTDIGAGAS SETTSSNSVS  60
GVSQLQQPPQ PLFPLGLSLD NGRDDVSISG AFAVKHEREA INMGNFYPGL EHLQSHAVYH  120
TVTQVQPFQG QPTSSTAVTV PHPPAIRPRV RARRGQATNP HGIAERLRRE RISERIKALQ  180
EPVPSCNKTD RAAMLDEILD YVKFLRLQVK VLSMSRLGGA SAVAQLVADI PMQSVEGDSG  240
ESRSNQHVWD KWSNAETDRL CAFAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594550.10.0PREDICTED: transcription factor UNE12-like, partial
SwissprotO227685e-51UNE12_ARATH; Transcription factor UNE12
TrEMBLM1B1D01e-132M1B1D0_SOLTU; Uncharacterized protein
STRINGXP_009594550.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-34bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]