PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594239.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 528aa    MW: 59285.7 Da    PI: 8.0153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19169259199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l+  ++f  +v 
  XP_009594239.1 169 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYCTAHKLVEGDVLVFQLVAPTRF--KVY 255
                     899********************99953..45567***************777777....***********************9987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_009594239.1 256 VIRA 259
                     8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-20161260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22162260IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-25167258No hitNo description
PfamPF023621.6E-16169259IPR003340B3 DNA binding domain
SMARTSM010199.1E-22169260IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183169260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MKIKVVHRSE HPTQEHRIFY PDTPKKEVFD EEPLGTQLPE PEPEPEPDSA IPNSSKDNNL  60
NLVDASNPIN SVVPSAQTPS SSLLGKRRRK PKEMIDQISP IPIRRRAIKK QPSASQSNNA  120
VADAGGKSII TKQERATADG SGSATQMKSP IIIRAEEFLS SIGNEYPSFM KLLVRSHVGS  180
CFWMGLPVPF CKNHLPRKDT PVILESETGE EFEIKYIAEK TGLSAGWRKY CTAHKLVEGD  240
VLVFQLVAPT RFKVYVIRAN DLKEVDGALS LLNLDAPPKQ SDAEGASAHN LKKRQKKSLP  300
ITVVHRRRRK ADLSKQLLAL EAQSGNDSDE VASEILEGSR SSGLAVNFRD IKSLEEFHIL  360
VNGVCINSEL PEDIRRKYYE LCCNKSAFLH DRLLQGLHCK LVAGVIFEVV NIADAIRACK  420
LTTQRMEFDI WEKSLKSFEL LGMNVGFLRT RLRWLVSLAF DSEGASDTKR YWEAKNEWSR  480
AEDEMRNLET KLVELKKASE TYGADVEALK SKAESYELMF QGEVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291309KKRQKKSLPITVVHRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594239.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A314KNS60.0A0A314KNS6_NICAT; B3 domain-containing protein
STRINGXP_009594239.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-37B3 family protein