PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38736.2 Da PI: 7.6839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.3e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ XP_009594219.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT- 106 79***************************9.89***************7777799***********************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy g+apkg+kt+W+mheyrl XP_009594219.1 107 EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-67 | 8 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGVQEMDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLG ESPRKNGSSR LDEWVLCRIY KKNSGGQKPN ISGLSSKEIS 180 HGSSSSSSSQ FDDMLESLPE IEDRYFSLPR MNSLRNLQQD DKLNLQHLGS GNFDWATLAG 240 FNSFPELGTG NQSQVHLNNQ NSNNNLNNLN EFFAHPTQLN FHGDVKFEGG VDDEVESGIR 300 AQRVNNSGFY QENSTGLQAY TNSVPDPFGI RYPTQTVNMG FSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-110 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-110 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-110 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-110 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594219.1 | 0.0 | PREDICTED: NAC domain-containing protein 72 | ||||
Refseq | XP_016484889.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 0.0 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A1S4B7P9 | 0.0 | A0A1S4B7P9_TOBAC; NAC domain-containing protein 72-like | ||||
STRING | XP_009594219.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-126 | NAC family protein |
Publications ? help Back to Top | |||
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