PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593983.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 67aa    MW: 7528.95 Da    PI: 11.4082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.23.2e-161762145
                    S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgk 45
                    k+i  +s r vtfskRr+g++KKA EL S   d++va+++fs+tg+
  XP_009593983.1 17 KKITKESSRMVTFSKRRKGLFKKAVELqSKTIDTQVAILVFSPTGR 62
                    679999*********************88888************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-12967IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.465962IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-171062IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-101131IPR002100Transcription factor, MADS-box
PfamPF003194.6E-181862IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-103146IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MPSFRKMGTG KKKIEIKKIT KESSRMVTFS KRRKGLFKKA VELQSKTIDT QVAILVFSPT  60
GRDGDPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593982.15e-35PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A1U7XVX11e-18A0A1U7XVX1_NICSY; MADS-box transcription factor 23-like
STRINGXP_009593982.12e-34(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-10AGAMOUS-like 71