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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 8909.72 Da PI: 12.182 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.8 | 2.1e-16 | 17 | 63 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgkl 46 k+i +s r vtfskRr+g++KKA EL S d++va+++fs+tg + XP_009593982.1 17 KKITKESSRMVTFSKRRKGLFKKAVELqSKTIDTQVAILVFSPTGMV 63 679999*********************88888************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.409 | 9 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.6E-14 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-16 | 10 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-10 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-18 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-10 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MPSFRKMGTG KKKIEIKKIT KESSRMVTFS KRRKGLFKKA VELQSKTIDT QVAILVFSPT 60 GMVTRHRGKR KGKERTGI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593982.1 | 1e-47 | PREDICTED: agamous-like MADS-box protein AGL23 | ||||
TrEMBL | M1AST4 | 9e-18 | M1AST4_SOLTU; Uncharacterized protein | ||||
STRING | XP_009593982.1 | 6e-47 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 1e-09 | AGAMOUS-like 71 |