PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593800.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 249aa    MW: 27278.2 Da    PI: 6.8047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10133180455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009593800.1 133 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 180
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-17127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-9127184No hitNo description
PROSITE profilePS5088815.459129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17129196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPMMNEARA FQAAAANPPF NLAEIWPFPI NAYANGDHHI PMNDLDHRTN HRTGSATKRR  60
DDDESAKGVS TSGNGLSESD SKRLKATGSN ENHESGGDGE GNSGKSADQP AKSAEPPKDY  120
IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD EIINYVQSLQ  180
RQVEFLSMKL EAVNTRVPPH IEGFPTKDLG QQAFEANAMA FGSQGTREYA GGTSPDWLHM  240
QIGGGFERR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754436e-44HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755166e-44HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593799.11e-178PREDICTED: transcription factor bHLH79
SwissprotQ69WS32e-73BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S4AX061e-174A0A1S4AX06_TOBAC; transcription factor bHLH79-like isoform X1
TrEMBLA0A1U7W7M11e-174A0A1U7W7M1_NICSY; transcription factor bHLH79 isoform X1
STRINGXP_009593799.11e-178(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-86BIG PETAL P