PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009593757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 593aa MW: 65783.9 Da PI: 4.2753 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 9.2e-16 | 14 | 52 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+ELSvLCd+++ + +fs+ gk XP_009593757.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPGGK 52 788889******************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-17 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.311 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.58E-16 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-14 | 14 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPG GKPSVYKSDN 60 SSFEDMITTK FAEVNPEERA KRKMECLDTI KKACKKSDHD VDIGEQLCPG DLTTADINFL 120 SQSLRIRLSD IEGRLRLWKN LDKIDSIQQL RKLENSISKS LNEIAKHKCG MGSLIFGAGQ 180 DFQPSSARHG MDSPLNFDAR KELHPCSSVH ACDSENIDVN EGMNSFDSSL LCDTGQDFQT 240 SSLMQHGMNL GQELYQCSSV HGGNSENMDV YEDLNSFPLE YLEESSFSFE SYTNLVCNKE 300 IEVSMPESVN FVPDEIFLDC EVNQEDIVTD FGFTFDVPQL EQTDDQGNAF DYNVNKGSRL 360 PHSDLVNIHD SSKSASGTCE KMILAKSLHF LYGMDSSSSD AGEEFSTSSS IKHGINLSST 420 QLDAGLSVNG GDSENMDDYE DLNAFDSCLK FDDEHEFQSS SSIGHYSMNS PVSFDAGQEL 480 HRSSSVNGGD SESINGYGDL NLFVQGFLDD PSLSIESCTD LACNHEVENY KLGYENCSAD 540 KIFLDCQLNQ ENIEMAFKSN LDLPLVEQMD VQESTFDCLN KGFGFPLLTS ILV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY183721 | 0.0 | AY183721.1 Nicotiana tabacum MADS box protein (Mads1;11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593754.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
Refseq | XP_009593755.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
Refseq | XP_009593756.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
Refseq | XP_009593757.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
Refseq | XP_018624362.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
Refseq | XP_018624363.1 | 0.0 | PREDICTED: uncharacterized protein LOC104090386 | ||||
TrEMBL | A0A1S4CDN8 | 0.0 | A0A1S4CDN8_TOBAC; uncharacterized protein LOC107817880 | ||||
STRING | XP_009593754.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 4e-45 | AGAMOUS-like 30 |