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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009593358.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MYB |
| Protein Properties |
Length: 267aa MW: 30867.7 Da PI: 6.309 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009593358.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.8 | 6.8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd +lv+ + G +W+tI++ g+ R++k+c++rw +yl
XP_009593358.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTIPKLAGLQRCGKSCRLRWINYL 61
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.8 | 8.9e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
XP_009593358.1 67 RGALSEAEEDQIIQLHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
78889*****************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MGRQPCCDKV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTI PKLAGLQRCG KSCRLRWINY 60
LRPDLKRGAL SEAEEDQIIQ LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQVG 120
IDPLTHKPID QEKYQQEPDD TIMELNLPIR HYKTETYDKS NEAENCTENA TDFSLSNNAY 180
HNMLSENFDV DLWNKSCKTM SNCYSPTLSL EVEESINFST VSAATESSSN VAPAEEQDSL 240
QQWMDSIFSC AVNQLEEDLF LLRKYNS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215376 | 3e-49 | AC215376.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0072B02, complete sequence. |
| GenBank | AC215464 | 3e-49 | AC215464.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0121H01, complete sequence. |
| GenBank | AC235801 | 3e-49 | AC235801.1 Solanum lycopersicum chromosome 3 clone C03HBa0140L21, complete sequence. |
| GenBank | HG975514 | 3e-49 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
