PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009593176.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 694aa    MW: 75756.5 Da    PI: 6.5633
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009593176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28200253155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  XP_009593176.1 200 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKRILDMMNVDGLTRENVASHLQKYRL 253
                     79*******************.********************************8 PP
2Response_reg79.21.4e-26181261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++++ ++ + +  G
  XP_009593176.1  18 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARTALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDNRLVMKGITHG 110
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+  eel +
  XP_009593176.1 111 ACDYLVKPVRLEELKN 126
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-1631685IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-3515144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-4315149No hitNo description
SMARTSM004482.2E-3216128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.0917132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2418126IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.10E-2819132No hitNo description
SuperFamilySSF466891.42E-19197257IPR009057Homeodomain-like
PROSITE profilePS5129411.91197256IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-30197258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24200253IPR006447Myb domain, plants
PfamPF002496.0E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTVEERENFD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY QVTTTSQART ALKMLRENRD  60
RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDN RLVMKGITHG ACDYLVKPVR  120
LEELKNIWQH VIRKKKVEPK NHIKSDDQDK ANQGGGEGGK GRQLSGNADQ NGKLNKKRKD  180
EEYESDENGN DDDDPTTQKK PRVVWSIELH RKFVAAVNQL GLEKAVPKRI LDMMNVDGLT  240
RENVASHLQK YRLYLKRISS EATQQANMVA ALGGKDSAYM RMGSLDGLGG FRTLAGSGRY  300
GQASLSSSYA SGGMLGRLNS PAGVSLRSLA SSPLLQPNHG QSLSNSMNSF TKLNPNVPPV  360
SQNASLFHGI PASLELDQLQ QSKRAIHMGE LNPLDEHGLL TAASSTFMDS RSVVGNSNSS  420
LSNVLNNPIL LQVSSQQPRT GGGFGNQPSL NVASFSSDAF NTGVSGSSNF LDHSRYNENC  480
QNSIQPVKFQ SSSFPSTEPF SNSHLPQDRV RENSTSAGPH LQNSTVDFSS STIVSLPFEP  540
SRGETQCLES LGGGVQIMNQ AHCQPWPDQN QHYSQNSNHI FGNMSSQLSS NGGVASLPQS  600
MDQNNEVVYR GVDVSLIGRS NGGSSALIQH RPNSRTRTSE DYLFETTKQQ VGFLPQGYGS  660
LDDLMSAMKP EQQDGAMLEG GEFGFAAYSF GSGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-26196259164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593176.10.0PREDICTED: two-component response regulator ORR24-like
RefseqXP_018624204.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A1S4BKN00.0A0A1S4BKN0_TOBAC; Two-component response regulator
STRINGXP_009593176.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-127response regulator 12