PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009593093.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 916aa MW: 101535 Da PI: 5.6519

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15	4.2e-05	688	748	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ ++ + ++++ e Ak+l ++t++q k+W Nr+a+ XP_009593093.1 688 KRKRTIMNEKQISLMEKALMDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 748 79****************977761155678999***9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-5	676	749	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.981	685	752	IPR001356	Homeobox domain
SMART	SM00389	1.4E-4	687	756	IPR001356	Homeobox domain
CDD	cd00086	3.65E-5	688	751	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MKEEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLA FYSLVILCTY SKVSNDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY 180 YKVDVLIDAA FAAVTVDIKI LRRNLSADHT HSQQEYGLKA EETLNHLCQQ CEASLQFLQS 240 LCQQKSFRER LVKNKELSSK GGVLLLAQAI MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL 300 LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SEKIYPKGQL 360 QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVVHGEF VSSWCSSDLP IREEDATLEY 420 DPFAAAGWVL DLFPFSDQSN TMSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI 480 CKEEKDLFFN KFVQFLRTKV SKTPEGFKSI SDSHKAATVS RNLGSLLSHA ESLIPAFLNE 540 EDVQLLRVFI TQLESLITPR ACGENRVQEA QNLGACLPPQ LREVAMDLNN RLNQLNSRIN 600 GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE 660 KINCNGPGEG REDEMVEASQ HEEKQQRKRK RTIMNEKQIS LMEKALMDEP DMQRNKASLE 720 FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP 780 GSPVEDVGNL SAARENVQRV TDPVLSTCFT ENPAAVSVAS TETAKCMAGQ YVVLVNDKAE 840 EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKVDRSAKL PYPSELTGTS FDQAERKFGF 900 MRVLWQSSKL FVLPAR

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MKEEGASCST DPVARPIHPA LDLISAVKGL HGLSSQELSR LIREAENNIL QHIPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLA FYSLVILCTY SKVSNDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY  180
YKVDVLIDAA FAAVTVDIKI LRRNLSADHT HSQQEYGLKA EETLNHLCQQ CEASLQFLQS  240
LCQQKSFRER LVKNKELSSK GGVLLLAQAI MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL  300
LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF GTGFQQSVAP SEKIYPKGQL  360
QLNAMRLADI FSDDSNFRSF ITTHFTEVLT EIFSVVHGEF VSSWCSSDLP IREEDATLEY  420
DPFAAAGWVL DLFPFSDQSN TMSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI  480
CKEEKDLFFN KFVQFLRTKV SKTPEGFKSI SDSHKAATVS RNLGSLLSHA ESLIPAFLNE  540
EDVQLLRVFI TQLESLITPR ACGENRVQEA QNLGACLPPQ LREVAMDLNN RLNQLNSRIN  600
GEGQSGEAGM KAEMTEQDKF IATDIEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE  660
KINCNGPGEG REDEMVEASQ HEEKQQRKRK RTIMNEKQIS LMEKALMDEP DMQRNKASLE  720
FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP  780
GSPVEDVGNL SAARENVQRV TDPVLSTCFT ENPAAVSVAS TETAKCMAGQ YVVLVNDKAE  840
EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKVDRSAKL PYPSELTGTS FDQAERKFGF  900
MRVLWQSSKL FVLPAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214463	1e-144	AC214463.1 Solanum lycopersicum chromosome 9 clone C09HBa0080D01, complete sequence.
GenBank	HG975448	1e-144	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-144	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593093.1	0.0	PREDICTED: nodulin homeobox isoform X1
Refseq	XP_009593094.1	0.0	PREDICTED: nodulin homeobox isoform X1
Refseq	XP_009593095.1	0.0	PREDICTED: nodulin homeobox isoform X1
TrEMBL	A0A1S4ASV0	0.0	A0A1S4ASV0_TOBAC; nodulin homeobox-like isoform X1
STRING	XP_009593093.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7844	5	7