PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009592908.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 339aa MW: 37953 Da PI: 9.4826

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009592908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.3e-19	36	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsessstcpyfdqle 86 +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ + r g+ ++++qC++k+e+l+kry+ + +++ r+ + s +++f++++ XP_009592908.1 36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCSAWVLFKRMD 129 8**********************************976555665589***************9988876411113455556777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-20	35	131	No hit	No description
PROSITE profile	PS50090	6.144	37	97	IPR017877	Myb-like domain
SMART	SM00595	5.1E-10	44	136	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MATLSSSTQH FSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN 60 LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS 120 AWVLFKRMDA MERGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNNVNT SNNRSSSSFQ 180 GVVSNGGGGF RIRIPGMPGA APPMAKPYSR MEDSGVENPS NFGPNNFGPG KTFRGDGFVK 240 KADMGKRVAG EGVGPVREKK KEDLMGEMVA AIKVLGDGFV RMERMKMDMA RELEEMRMEM 300 EMKRTQMILE SQQRIVEAFA QALSEKNHKK PKRMPAHEC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592908.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1S4AXS0	0.0	A0A1S4AXS0_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009592908.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-50	Trihelix family protein