PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009592750.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 259aa MW: 28954.2 Da PI: 9.7421

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009592750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.5	2e-32	124	180	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF XP_009592750.1 124 DGPIYVNAKQYHGIMRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 180 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.9E-36	122	183	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.974	123	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.1E-28	126	180	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-23	126	148	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	128	148	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-23	157	180	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MLTLKSKEMK SLDPDLQGET LRLTHSTINS QDEMTTSEKT NSQDQCASSE YVHDERYGRD 60 MQVQIKPALF SSQNEVAHST GFSPFGYSDP YMSGLYTAYG PQAFPQMTGI APTRVPLPLD 120 LAEDGPIYVN AKQYHGIMRR RQIRAKLEAQ NKLVKNRKPY LHESRHLHAV NRVRGSGGRF 180 LSSKKVNQSD PNSYPTNSTS SQDSVERENS TSAFSSVRKD VNNGVSFQQQ PDHRAFGVSS 240 HMAITMQGNG AQQRAPIVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	126	193	4	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592750.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A1U7V496	0.0	A0A1U7V496_NICSY; nuclear transcription factor Y subunit A-7-like
STRING	XP_009592750.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	1e-42	nuclear factor Y, subunit A8