PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592683.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 834aa    MW: 92665.4 Da    PI: 6.8935
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-22133234199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      +  ++ +++l  +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_009592683.1 133 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-RQPPTQELAAKDLHANQWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 224
                     99*****************************73.3334459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_009592683.1 225 GELRVGVRRA 234
                     99*****996 PP
2Auxin_resp121.56.1e-40259341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tk++F+v+Y+Pr+s+++F+v++++++k++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d dp rWp+SkWr+Lk
  XP_009592683.1 259 AWHAIQTKTMFTVYYKPRTSPADFIVPYDQYMKSVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDGDPKRWPESKWRCLK 341
                     89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-40126248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-39129262IPR015300DNA-binding pseudobarrel domain
CDDcd100179.28E-20131233No hitNo description
PROSITE profilePS5086311.251133235IPR003340B3 DNA binding domain
PfamPF023623.2E-20133234IPR003340B3 DNA binding domain
SMARTSM010195.2E-21133235IPR003340B3 DNA binding domain
PfamPF065076.4E-37259341IPR010525Auxin response factor
PfamPF023094.0E-9705784IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-11706784No hitNo description
PROSITE profilePS5174521.617708792IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MCTEMAASDS GHNAPGGAGN VDAERALYTE LWRACAGPLV TVPREGQLVF YFPQGHIEQV  60
EASTNQVSDQ QMPVYNLPSK ILCRVINVLL KAEPDTDEVY AQLTLMPEPN QDESAVTKEP  120
MPPSPPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELAAKDLHA  180
NQWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQGN  240
APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA DFIVPYDQYM KSVKNNYSIG  300
MRFKMRFEGE EAPEQRFTGT IVGIEDGDPK RWPESKWRCL KVRWDESSAI PRPDQVSPWK  360
IEPALTPPAL NPLPIPRPKR PRSNVLPSSP DSSVLTREGS SKITADPSQA SGFSRVLKGQ  420
EMSTLKGNFV ENNGSDSSEN PIVWPPPLND GKTDVHSASR RCLSDKWLPL GRPESSFTDL  480
LSGFGVQVSS SHGLHLPTGG QTALPASLVK RQAMDKENEF SLLRKHWSLA SSGLSLNLMD  540
SGLKGGDTLY QMRETSRCSG FNEYPTLPGH RIDNQQGNWL MPQSVLPYTQ MSTHSGEMMP  600
KPMASLQPEA VKPKEGNCKL FGIPLRSDSA SIVPVKLRNN SPIDSASNMH FGVHHQFPAT  660
ESDLRSEQSK GSKVLDDGIT VNDQEKQFQT SHLGTRDREG KGLTNSTRSC TKVHKHGTAL  720
GRSVDLAKFN NYEELIAELD HLFYFNGELK AQNKNWLVVY TDDEGDMMLV GDDPWQEFCG  780
MVCKIFLYTK EEVQRMNAGS LNSIGEDNSS VAEGSDAKEV KDMQLPFESS PDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17453631354Auxin response factor 1
4ldw_A1e-17453631354Auxin response factor 1
4ldw_B1e-17453631354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1439400.0HM143940.1 Solanum lycopersicum auxin response factor 11-like (ARF11) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592683.10.0PREDICTED: auxin response factor 2-like isoform X1
RefseqXP_018624095.10.0PREDICTED: auxin response factor 2-like isoform X1
RefseqXP_018624096.10.0PREDICTED: auxin response factor 2-like isoform X1
RefseqXP_018624097.10.0PREDICTED: auxin response factor 2-like isoform X1
SwissprotK4DF010.0ARF2B_SOLLC; Auxin response factor 2B
TrEMBLA0A1S3ZQQ90.0A0A1S3ZQQ9_TOBAC; Auxin response factor
STRINGXP_009592683.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26182444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Breitel DA, et al.
    AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening.
    PLoS Genet., 2016. 12(3): p. e1005903
    [PMID:26959229]