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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009592534.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
B3 |
| Protein Properties |
Length: 337aa MW: 36719.6 Da PI: 6.8248 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009592534.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 76 | 4.2e-24 | 179 | 280 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++
XP_009592534.1 179 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 270
99****************************86333.45679************************************************..4489 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+ l+++++r+
XP_009592534.1 271 GDLRLGIRRA 280
999**99986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MEIDLNHAIV SEVEKNACCN GECDKRGVGG SCVNCNLSTT STSSCSSNAS SSSSSSLALS 60
SIYMELWHAC AGPLTSLPKK GNVVVYFPQG HMEEAASVSP FSPIKMDFPT FGLQPQIFCR 120
VEDVQLLANK ENDEVYTQLT LLPLPESVAI SLKGKEHEDL GVDEEGNGIN PGKSASHMFC 180
KTLTASDTST HGGFSVPRRA AEDCFPPLDY KEQRPSQELI AKDLHGVEWK FRHIYRGQPR 240
RHLLTTGWSI FVSQKNLVSG DAVLFLRGEG GDLRLGIRRA ARPRNGLPES IIKSQYSDSD 300
VLSAVATAVS AKSSFHVFYS PRYFAKSLCM VFCLVVA
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 8e-91 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldw_A | 8e-91 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldw_B | 8e-91 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldx_A | 1e-90 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldx_B | 1e-90 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldy_A | 9e-91 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| 4ldy_B | 9e-91 | 45 | 322 | 2 | 267 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ475533 | 0.0 | GQ475533.1 Petunia x hybrida putative ARF4 protein mRNA, complete cds. |
| Publications
? help Back to Top |
- Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
Mol. Gen. Mikrobiol. Virusol., 2013.
[PMID:24003511] - Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
[PMID:26108442] - Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
Plant Physiol. Biochem., 2016. 104: p. 146-54
[PMID:27031426] - Matsumura Y, et al.
A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
Biol Open, 2016. 5(7): p. 942-54
[PMID:27334696] - Guan C, et al.
Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
Curr. Biol., 2017. 27(19): p. 2940-2950.e4
[PMID:28943086] - Liu Z, et al.
ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
Plant Cell Physiol., 2018. 59(1): p. 179-189
[PMID:29145642]
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