 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009592504.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
AP2 |
Protein Properties |
Length: 519aa MW: 58146.1 Da PI: 10.2482 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009592504.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 25.2 | 4e-08 | 82 | 124 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47
+++ GV+ +k g++ A I+dp + k+++lg+f ta+eA a+
XP_009592504.1 82 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASNAYL 124
6899***999.7*********72....35*****************95 PP
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2 | AP2 | 34.8 | 4.1e-11 | 230 | 274 | 4 | 52 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
+G+r+ k +g++ A Irdp +r k+++lg+f+t eeA +a+ ++ +
XP_009592504.1 230 HGIRRQK-NGKYGAVIRDP----IRlKQIWLGTFDTVEEASEAYFSYKSE 274
69*9888.8*********8....369******************988766 PP
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3 | AP2 | 39.1 | 1.9e-12 | 321 | 367 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
++ GV+ +k +g++ +eI p + k+++lg+fgtaeeA +a+ +++
XP_009592504.1 321 HIVGVHKNK-WGKYTSEITNPI----TkKKIWLGTFGTAEEASRAYQSKKLE 367
789***999.*******99972....36*****************9776665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 519 aa
Download sequence Send
to blast |
METVAEQKET EEKTSNKKQN KLTQVVILDS DAVVSSASES QESRRRWSAE ILDYKVKEQN 60 HNHNHNHNHM DSNSTVMDLH ATKFAGVHKR KCGKYGAAIK DPIKKKKVWL GSFKTAQEAS 120 NAYLVKQSEF AAQLELLKAN QDSTKTKSKS SASVQLRQKI PSSQLKSQGS NSTNTTNAAE 180 RSKTNGKNLF IREIRKDSFQ EKQGTRRSSS DGCNINTVTT SSTKAKLSLH GIRRQKNGKY 240 GAVIRDPIRL KQIWLGTFDT VEEASEAYFS YKSEFDKLCQ LGNKENKPKS CDQIQHESPV 300 GASLSLDTAS VGRDKRRKTT HIVGVHKNKW GKYTSEITNP ITKKKIWLGT FGTAEEASRA 360 YQSKKLEFQK LVKAKQKQCT NNQTHFTGES SDQRIDSREK RQSISMTRNL LGTSLNTAEE 420 AFRAYHQSKE FDFQCSTKAG LQNNMPTDSS GGEKKQEGQV DEDLWMGHWI QLPGGSEVKF 480 SLKLGLPIID NYGSLLGKDE HVVFANGAPH NRGVHVATN
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 88 | 106 | KRKCGKYGAAIKDPIKKKK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 5e-43 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |