PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009592395.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 243aa MW: 27047.6 Da PI: 5.8301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009592395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	37	85	1	53
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r+ + erE+ R+++N+ f L l + + + Ka+iL ++ +++k+ XP_009592395.1 37 KRVHKAEREKLKREHLNELFLDLANALELS----EQTNGKASILNETARFVKD 85 79999********************998....68899999**9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.0E-7	34	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-4	34	97	No hit	No description
SuperFamily	SSF47459	5.37E-11	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.779	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGAESPTSSA ENGGIAVETS SPNGSPPSKK IQKKVPKRVH KAEREKLKRE HLNELFLDLA 60 NALELSEQTN GKASILNETA RFVKDMISQI KQLKRENTAL LSESQYLSME KKELQDDNSA 120 LEAQIDKLEG EVKERVAKTN LDLNLSLTET QLPQLASQVT DNFLQLPGSE HPFQQMQMMN 180 SLYVVPLNST PQAYPEPDAA KPAAMPTYSV KKPQARYPTP ADVWPSQILE KRPQLGQEVQ 240 NSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592394.1	1e-177	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A1S3YWE9	1e-165	A0A1S3YWE9_TOBAC; transcription factor bHLH47-like
STRING	XP_009592394.1	1e-176	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	7e-45	bHLH family protein