PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009592165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 220aa MW: 25658.5 Da PI: 10.0887 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 32.1 | 3.1e-10 | 71 | 115 | 48 | 97 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++++q+ +K++rLK+K++k + + ++++hdqki+e++++iWg XP_009592165.1 71 NFTETQIAKKLKRLKEKYHKLARS-----KSLIKTPHDQKIYEIARQIWG 115 6899***************99988.....6789****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-9 | 42 | 115 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MTTPPRPRKN PSSAANHRRN SPKSSEKPTP ITKTISKTPE THRVFTEIEE IQLLKTLLES 60 PNNSEFTSNG NFTETQIAKK LKRLKEKYHK LARSKSLIKT PHDQKIYEIA RQIWGRNAAK 120 GKEPVVELNR SCEEEKGVEE EVNLEEFPFL VSEMMSIFGR NEYCKEGLRR LGKEKLKRMN 180 EKWMELRLKE AEVMVNKAKL YHQYLKLVVE DSKGTDNEMN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592165.1 | 1e-161 | PREDICTED: probable transcription factor At1g61730 | ||||
TrEMBL | A0A1J6L2S0 | 1e-124 | A0A1J6L2S0_NICAT; Uncharacterized protein | ||||
STRING | XP_009592165.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13634 | 7 | 8 |