PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592002.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1003aa    MW: 112358 Da    PI: 6.6289
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.61.2e-53511653116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwl++ e++ iL+n+e  +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009592002.1  51 REgHFRWLRPAEVVFILQNHEDQQLANQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQR 145
                     55588****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy++
  XP_009592002.1 146 RSYWMLDPAYEHIVLVHYRD 165
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.93246172IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7449167IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4754165IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-9441528IPR013783Immunoglobulin-like fold
CDDcd001026.82E-6444528No hitNo description
SuperFamilySSF812963.78E-18444528IPR014756Immunoglobulin E-set
PfamPF018335.1E-8444519IPR002909IPT domain
Gene3DG3DSA:1.25.40.204.3E-13643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.408643735IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.37E-14647737IPR020683Ankyrin repeat-containing domain
CDDcd002044.60E-12648735No hitNo description
PfamPF127966.9E-7663736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.843676708IPR002110Ankyrin repeat
SMARTSM0001564793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876794823IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-6830900IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.63852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.51853882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012855873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0013875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.883877901IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-5878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSLVHHKKQD LSLSLSKWSI NDGAIFQALF IIPLLCLNFQ QKRYNINDLV REGHFRWLRP  60
AEVVFILQNH EDQQLANQPP QKPASGSMFL FNKRVLRYFR KDGHSWRKKK DGRTVGEAHE  120
RLKVGNAEAL NCYYAHGEKN PNFQRRSYWM LDPAYEHIVL VHYRDITEGM QIAAFMSQSS  180
PISSTFSLSP SLYSTQHPGF TVFGSESYQQ YPNESSPGSG EVCSDAGING KGMNISDITG  240
RTEGVSSSPR VEISQALRKL EEQLSLNDDS LEQIDPLYSE IENSDDVENF VHDNNSLVQI  300
QHKSNNLLLQ PHSGESSESQ HQLLNLDGNI WKEMLDHCRS FPAAESPAKC FEKLDENGTL  360
QTSSGVGPIE ATESDRWLKF GGKALKSSLT NFKQVEDFKY PACARINTYG SYSDQYTTIF  420
DQDQIGTSFE DDMSLTIAQK QKFTIHDISP DWGYSSEATK IVIVGSFLCN PSEYTWTCMF  480
DDIEVPVQII NEGAIRCQAP PHLPCKVTLC VTTGNRVSCS EVWEFEYRVK FDDHGQKNLA  540
EVGGACKSSE ELLLLVRFVQ MLLSDSSVQK GDGSGSSNDI LENSKASEDS WSQVIESLLF  600
GTSTSMVTVD WLLQELLKDR LKQWLSSKLQ VKNNQMGYSF SRKEQGIIHM VAGLGFEWAL  660
HPILDAGVGV NFRDINGWTA LHWAARFGRE KMVASLVASS AFAGAVTDPS SQDPFGRTAA  720
SIASSCGHKG VAGYLSEVAL TSHLSSLTLE ENELSKGTAD VEAERTISSI STTSAATHED  780
QLSLKDTLAA VRNAAQAAAR IQSAFRAHSF RKRRQREAAR AATTSGDEYC VLSNDVLGLS  840
AASKLAFRNM RDYNSAALAI QKKYRGWKCR KDFLAFRQKV VKIQAHVRGY QVRKEYKVCW  900
AVGILEKVVL RWRRRGVGLR GFRLEEEPIE ESEDEDILKL FRKQKVDAAI NEAVSRVLSM  960
VDSPEARQQY HRILEKYRQA KAELGVKSDT VSTAHGDMEN SDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660470.0JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592004.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1S4D3340.0A0A1S4D334_TOBAC; calmodulin-binding transcription activator 4-like isoform X1
STRINGXP_009592002.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]