PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009591911.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 401aa MW: 44563.5 Da PI: 7.3788

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009591911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	108	168	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss XP_009591911.1 108 PDKLVPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 168 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	108	165	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	110	166	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	112	166	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	114	150	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MSEVRDPEIK LFGQTIGLTQ ERGLWNRKSS SYSTSTASNE DKIISKGEFT QSKQDNELVD 60 PTADSLVEPE TSSGISDELK IQDADKETLS PKSIEEEDSS EEKTLKKPDK LVPCPRCNSM 120 ETKFCYYNNY NVNQPRYFCK NCQRYWTAGG TMRNVPVGSG RRKNKSSSTS NYGMHLPALS 180 ANETVLTFGS DKPLCDSMVS VLNIAEKEIG NDQSNGVCST SSVITEKEKN SSTHDLTWKN 240 FQAFHPQVPY FLGAPWPYSG FPVSFYPAQP YWGCTVASPW NVPWLSSDQS VHNTGPTSPT 300 LGKHSRDGSK LSTSQSGREG ERCVLIPKTL RIDDPNEAAK SSIWSTLGIK NEKIDSVRGA 360 RLFKAFNTKA DHRNRESDAS FVLQANPAAL SRSLNFREST Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MSEVRDPEIK LFGQTIGLTQ ERGLWNRKSS SYSTSTASNE DKIISKGEFT QSKQDNELVD  60
PTADSLVEPE TSSGISDELK IQDADKETLS PKSIEEEDSS EEKTLKKPDK LVPCPRCNSM  120
ETKFCYYNNY NVNQPRYFCK NCQRYWTAGG TMRNVPVGSG RRKNKSSSTS NYGMHLPALS  180
ANETVLTFGS DKPLCDSMVS VLNIAEKEIG NDQSNGVCST SSVITEKEKN SSTHDLTWKN  240
FQAFHPQVPY FLGAPWPYSG FPVSFYPAQP YWGCTVASPW NVPWLSSDQS VHNTGPTSPT  300
LGKHSRDGSK LSTSQSGREG ERCVLIPKTL RIDDPNEAAK SSIWSTLGIK NEKIDSVRGA  360
RLFKAFNTKA DHRNRESDAS FVLQANPAAL SRSLNFREST Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC284850	1e-134	KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591911.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
Refseq	XP_016442364.1	0.0	PREDICTED: cyclic dof factor 1-like
Swissprot	Q93ZL5	1e-87	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A1S3XR54	0.0	A0A1S3XR54_TOBAC; cyclic dof factor 1-like
STRING	XP_009591911.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-86	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]