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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009591694.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 678aa MW: 75036.1 Da PI: 6.5153 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.7 | 6.1e-29 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
XP_009591694.1 214 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 267
79*******************.********************************8 PP
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| 2 | Response_reg | 80.7 | 4.6e-27 | 34 | 142 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93
vl+vdD+p+ +++l+++l++ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + G
XP_009591694.1 34 VLVVDDDPTCLRILEKMLRNCYY-EVTKCNRAEVALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKDVVMKGVTHG 126
89*****************9999.***************999999**********************6654.8********************** PP
ESEEEESS--HHHHHH CS
Response_reg 94 akdflsKpfdpeelvk 109
a d+l Kp+ +e+l +
XP_009591694.1 127 AYDYLIKPVRIEALKN 142
************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.7E-182 | 13 | 669 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 2.5E-42 | 31 | 155 | No hit | No description |
| SuperFamily | SSF52172 | 5.12E-36 | 31 | 155 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 1.1E-31 | 32 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.744 | 33 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.2E-24 | 34 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 3.15E-29 | 35 | 148 | No hit | No description |
| PROSITE profile | PS51294 | 11.674 | 211 | 270 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.15E-20 | 211 | 271 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-30 | 213 | 272 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.0E-25 | 214 | 267 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.9E-9 | 216 | 266 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 678 aa Download sequence Send to blast |
MNVGSGSVVK SMSATGCWKS GDVVSDKFPV GLRVLVVDDD PTCLRILEKM LRNCYYEVTK 60 CNRAEVALSL LRENKNGFDI VISDVHMPDM DGFKLLEHIG LEMDLPVIMM SADDSKDVVM 120 KGVTHGAYDY LIKPVRIEAL KNIWQHVIRK KKHEWKDNNY DQSGSVEEGD RQQKPPEDVD 180 YSSSANEGNW RNSKKRKEEE EEAEERDDTS TLKKPRVVWS VELHQQFVQA VHQLGIDKAV 240 PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGASQHQS SLNNSFMGRP DATFGTISPL 300 NGLDLQAIAA AGQIPAQSLA TLQAAALGRS ATKSAISMPL VDQRNLFSFE NSKLRFPEGQ 360 QQLNNSNKQI DLLHGIPTAM EPKQLANLNH PSQSFVGINT QVNSMAQHNN SLLMRISQSQ 420 PRAQMLNGEN NGHQVSRLPL SMQQRLSPEG IPGTVPAQSG IVDNARGSVY NPVSQASSMV 480 DFSLNQSKEL QSYNFSLGSN NSGMSTLTNR GMLQEEMNSD IKGSRGFPSN YDMFTELHQQ 540 KSQNWGLQNV GSTFDASHHP SIQGSQGVSS QLLFQQGISS THNSGQNRNA PIGKPMYSNA 600 DESGHVNPMG GPQLNSLGGN MLAVKVERFS DTDYHSTIYH EQFGQEDLMS AFLKQQGNVG 660 PVETEFGFDG YTLDNLPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 5e-21 | 213 | 273 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009591695.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X1 | ||||
| Refseq | XP_009591696.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A1J6I209 | 0.0 | A0A1J6I209_NICAT; Two-component response regulator | ||||
| STRING | XP_009591694.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3191 | 24 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-177 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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