PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591471.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 93aa    MW: 10420.7 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.3e-0721601554
                    HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +i +  ++L++llP+ +   +s K s + +L+++++YI++L
  XP_009591471.1 21 QIIDLVSKLQQLLPEiR-TRRSNKASASKVLQETCNYIRNL 60
                    56677799*******77.799999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.693660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-72175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-72479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQSS SAGSSRISDD QIIDLVSKLQ QLLPEIRTRR SNKASASKVL QETCNYIRNL  60
NREVDDLSDR LSQLLSTIDA DSPEAAIIRS LLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-40HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591471.11e-57PREDICTED: transcription factor PRE1-like
RefseqXP_016465585.11e-57PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX12e-42PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S3ZM172e-56A0A1S3ZM17_TOBAC; transcription factor PRE1-like
STRINGXP_009591471.14e-57(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.15e-30bHLH family protein