PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009590871.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 577aa MW: 63350.8 Da PI: 9.1867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009590871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H XP_009590871.1 74 FVCEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	15.1	6.7e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_009590871.1 150 YKCEKCSKKYAVQSDWKAHTKTC 172 9********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.0E-6	73	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.8E-8	73	96	No hit	No description
Pfam	PF12171	3.8E-5	74	96	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	74	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	115	145	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-5	138	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.8E-8	145	170	No hit	No description
SMART	SM00355	71	150	170	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MAAGPSSAVF LAMREEEQNQ QMKQQQQQQE LLIQQQPQQQ QAPQKKRRNQ PGTPNPDAEI 60 IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH YSRKHGEKKY KCEKCSKKYA VQSDWKAHTK TCGTREYKCD 180 CGTLFSRRDS FITHRAFCDA LAQESARNPP SLSSIGSHLY GSNNNMSLGL SKMGSQISDH 240 QHHSSNSTDI LHFGSNIKTS TGQFDHNNLM GTSIGSAFRP STSFFLPADQ SNHQDYAANK 300 PSIHGLMQLP DLHNNGNNNS SPSVASMFNL NFFQNSNNNS ENVGNSNISG GGGGLLLPSH 360 QFSNSSGDGS NNSSNMFSAG SLLGTDHHIS SSSIPSLYGN NLNNNNNTAS PMSATALLQK 420 AAQMGSTTSN NNSASLLKAF GSSSSATKSD IHPPPPVNFG NVVYGDPLSE NHLHDLVVNA 480 YGNNDQNQQN NYGNSFEQQQ PPQKKQMLNN FSMENMGTEQ ANRLTRDFLG VGEIVRSMSG 540 GFGSSHRDHQ QQQQMNTLDS KAPQSHHQSF GGAGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MAAGPSSAVF LAMREEEQNQ QMKQQQQQQE LLIQQQPQQQ QAPQKKRRNQ PGTPNPDAEI  60
IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH YSRKHGEKKY KCEKCSKKYA VQSDWKAHTK TCGTREYKCD  180
CGTLFSRRDS FITHRAFCDA LAQESARNPP SLSSIGSHLY GSNNNMSLGL SKMGSQISDH  240
QHHSSNSTDI LHFGSNIKTS TGQFDHNNLM GTSIGSAFRP STSFFLPADQ SNHQDYAANK  300
PSIHGLMQLP DLHNNGNNNS SPSVASMFNL NFFQNSNNNS ENVGNSNISG GGGGLLLPSH  360
QFSNSSGDGS NNSSNMFSAG SLLGTDHHIS SSSIPSLYGN NLNNNNNTAS PMSATALLQK  420
AAQMGSTTSN NNSASLLKAF GSSSSATKSD IHPPPPVNFG NVVYGDPLSE NHLHDLVVNA  480
YGNNDQNQQN NYGNSFEQQQ PPQKKQMLNN FSMENMGTEQ ANRLTRDFLG VGEIVRSMSG  540
GFGSSHRDHQ QQQQMNTLDS KAPQSHHQSF GGAGNFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-34	146	225	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-34	146	225	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-110	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590871.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_009590872.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-131	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1S4B1G4	0.0	A0A1S4B1G4_TOBAC; protein indeterminate-domain 5, chloroplastic-like isoform X1
TrEMBL	A0A1U7X614	0.0	A0A1U7X614_NICSY; zinc finger protein JACKDAW-like
STRING	XP_009590871.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-101	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]