PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009590841.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 367aa MW: 41897.1 Da PI: 5.1079

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009590841.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.5e-11	67	154	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+l ++d +s+ l +pk+ a ++ +s +l+ d+ + We+ l+ ++ ++r + +t+ Wk+Fv++n+ k++D vv++ + ++++l++ XP_009590841.1 67 FEKQL-TEDDITSDHLQIPKRMA-HYI----QSLELQRADPGEKYWEMDLQLDNWGDReCQFTGQWKDFVNENKSKAKDLVVIEIFN-NKKRLKI 154 89999.666666667*****9.552....45689999*******99665555599*********************655.4554555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-9	62	160	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-10	64	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.12E-8	66	154	No hit	No description
Pfam	PF02362	3.7E-9	67	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MSEREDNSGL LDYLLEKNEI YDNFQDNAEN SSTGFLRTKD SKGESAGAHC VMGTAWVYRD 60 ENGKQIFEKQ LTEDDITSDH LQIPKRMAHY IQSLELQRAD PGEKYWEMDL QLDNWGDREC 120 QFTGQWKDFV NENKSKAKDL VVIEIFNNKK RLKIGCTSDQ KAINLNNPIF LRRLSRADVK 180 GLYVQKLREQ YSYSGNTGLI EIEPVIEMKL CSEIVYRYGG TNGVMFIQLP KKEVEKNLGR 240 DLSLPAVGGE IALPLFDPVG NNVVEMKLVH TEKDEYHIGG EWEIYAAKYD LLMSDTIFLD 300 KVTVHRDHDQ KLNNPSTAKL SYHYEITYQR RRGTKDQSSL AAAAATVLDD AGNNNIKDNG 360 VNSCIML

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MSEREDNSGL LDYLLEKNEI YDNFQDNAEN SSTGFLRTKD SKGESAGAHC VMGTAWVYRD  60
ENGKQIFEKQ LTEDDITSDH LQIPKRMAHY IQSLELQRAD PGEKYWEMDL QLDNWGDREC  120
QFTGQWKDFV NENKSKAKDL VVIEIFNNKK RLKIGCTSDQ KAINLNNPIF LRRLSRADVK  180
GLYVQKLREQ YSYSGNTGLI EIEPVIEMKL CSEIVYRYGG TNGVMFIQLP KKEVEKNLGR  240
DLSLPAVGGE IALPLFDPVG NNVVEMKLVH TEKDEYHIGG EWEIYAAKYD LLMSDTIFLD  300
KVTVHRDHDQ KLNNPSTAKL SYHYEITYQR RRGTKDQSSL AAAAATVLDD AGNNNIKDNG  360
VNSCIML

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590841.1	0.0	PREDICTED: uncharacterized protein LOC104087951
TrEMBL	A0A1J6IMK1	0.0	A0A1J6IMK1_NICAT; Uncharacterized protein
STRING	XP_009590841.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14354	3	4