PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590723.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 482aa    MW: 53572.9 Da    PI: 6.2586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13302345755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++L+
  XP_009590723.1 302 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELE 345
                     57*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-178155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.33E-13293349No hitNo description
PROSITE profilePS5088815.605295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-16297363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11303345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKAVDVNV KKENGGQLTF  60
TTLCRDSQIQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT SNEPKWIIHT EVSNSTLSHE  120
LKGTLVLIPV AGGLVEIYNS KLIYKDQKTI DFIINRFKHG SEKASSSSAK KEDQALDSFP  180
LEKLSFCAPL LQYTSFPSSA PLISQVSESS ANPSIQGSPT CSIPSNELTL CHSTSDNLSR  240
NIPLSQSSDV YFEHTELQCS GNLSRMEGAV FPWNQENYII AGDVYTMGKK RQRGPYQSKN  300
LVTERKRRNR IKDGLFALRA LVPNISKMDK VAILGDAIDY INELEENVKL YQVELNELAA  360
EVSKNESSEV VLSDMSEMSK VTGPTNEKTQ ISINTTKRTR MEGQVEVNQI GAREFLLKVS  420
GSHKPGGFTQ LMEAMNSLGL EVVNTNFTTF GGEILSIFIA RANMHRVVEA QQLRSSLIEL  480
TS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293GKKRQRG
2288307KKRQRGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887812e-48AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBankHG9754442e-48HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-48HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623502.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X3
TrEMBLA0A1S4DF420.0A0A1S4DF42_TOBAC; transcription factor ABORTED MICROSPORES-like
STRINGXP_009590722.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.16e-80bHLH family protein