PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590722.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 486aa    MW: 54147.5 Da    PI: 6.2586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13306349755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++L+
  XP_009590722.1 306 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELE 349
                     57*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-178159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.04E-13297353No hitNo description
PROSITE profilePS5088815.605299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-16301367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17306368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-11307349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKAVDVNV KKENGGQLTF  60
TTLCRDSQIQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT SNEPKWIIHT EVSNSTLSHY  120
PWQELKGTLV LIPVAGGLVE IYNSKLIYKD QKTIDFIINR FKHGSEKASS SSAKKEDQAL  180
DSFPLEKLSF CAPLLQYTSF PSSAPLISQV SESSANPSIQ GSPTCSIPSN ELTLCHSTSD  240
NLSRNIPLSQ SSDVYFEHTE LQCSGNLSRM EGAVFPWNQE NYIIAGDVYT MGKKRQRGPY  300
QSKNLVTERK RRNRIKDGLF ALRALVPNIS KMDKVAILGD AIDYINELEE NVKLYQVELN  360
ELAAEVSKNE SSEVVLSDMS EMSKVTGPTN EKTQISINTT KRTRMEGQVE VNQIGAREFL  420
LKVSGSHKPG GFTQLMEAMN SLGLEVVNTN FTTFGGEILS IFIARANMHR VVEAQQLRSS  480
LIELTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297GKKRQRG
2292311KKRQRGPYQSKNLVTERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1887812e-48AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBankHG9754442e-48HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755172e-48HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590722.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
RefseqXP_016511956.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A1S4DF420.0A0A1S4DF42_TOBAC; transcription factor ABORTED MICROSPORES-like
STRINGXP_009590722.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-78bHLH family protein