PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009590626.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 338aa MW: 39370 Da PI: 4.3312

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009590626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.1	6.1e-15	97	182	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ e+ +l+r++l++ +W+ev++k+ + g+e+s ++C++ ++ l+k+ykk+ + ++k + +s++p+f++++ XP_009590626.1 97 WSEEESFVLLEVWGERYLELGRRSLRAEDWAEVAEKVtEMIGVEKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKMD 182 ***********************************5568******************99999988899999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.2E-20	96	184	No hit	No description
PROSITE profile	PS51029	8.589	97	189	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDDSDDETRY PSRPNSIYTS SLRSRRSIRN PTSYYYGYNN NEFQYDHDDE SDEDEAEQEF 60 SSGENGYDSF QKRRKLETLV SNYEFAPHSH SSKGGMWSEE ESFVLLEVWG ERYLELGRRS 120 LRAEDWAEVA EKVTEMIGVE KSEIECRNQL DVLKKKYKKE ITKMEKTGGG FHSKWPFFKK 180 MDMLMNLRMK GHCGLGCGLD SGEYVFMDPR MYLDRSNVLD EMRDSPAGSD ADNDEEEEEE 240 EQGSGGWEGD NESAKLLADS IQRFGQIYEK IENGKRKQMM ELEKMRRDFQ RELELQKKQI 300 VERAQEEIAK IRDNDDNEDN GDEDGEETDN ISGEKLGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590626.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1S4BIQ8	0.0	A0A1S4BIQ8_TOBAC; trihelix transcription factor ASIL2-like isoform X1
STRING	XP_009590626.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-79	Trihelix family protein