PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590515.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 403aa    MW: 44775.4 Da    PI: 6.0192
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.96.8e-2444136297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     +f+r+w+e Dei +LqGl+d     g+  +  d++ fy  +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g ++s+ ++hd   ++ls+++
  XP_009590515.1  44 KFHRIWTEPDEIRFLQGLLDD----GSLLFPrDLNIFYTRFSNTMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDMSLLSPHDIALYDLSRQL 134
                     699*****************8....7766666*************************************************************** PP

          DUF573  96 Wg 97 
                     W+
  XP_009590515.1 135 WH 136
                     *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-2645136IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDSTLPLSQS PTDTASKLPI KRKTTDDPFI SSAGSDPQKP PPFKFHRIWT EPDEIRFLQG  60
LLDDGSLLFP RDLNIFYTRF SNTMSQPYTK SQLSEKLRRL RKKFRVISSR LSKGLDMSLL  120
SPHDIALYDL SRQLWHPDFA NTSPFNADKS KRSNLVGVKV SFLPIVPSAP GPGKGLNQYD  180
TGPGQGSFLP NTPYVSGPDP NKGSGQDPNQ DGTGPYQDKL STDIDSLSIG NSNRITGKDP  240
THGGVSVSKE NVEVGQVNNE NTDEIGEFCD GDGKLSEVNV EFESGDVGDK RVGCSCLDGP  300
VRVGLGCRIG EIAAKVVMDV FDECLKDSKN GGFLKDESLD KFEERWREQR VVELDVLARR  360
LRLEIVSFIT CKYWYVGIGS KLYDMNHPRP EIFFSASHCP REM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590515.10.0PREDICTED: uncharacterized protein LOC104087681
TrEMBLA0A1S3XC000.0A0A1S3XC00_TOBAC; uncharacterized protein LOC107763459
STRINGXP_009590515.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.18e-19DNA-binding storekeeper protein-related transcriptional regulator