PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009590494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29566.4 Da PI: 5.4577 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76 | 8.8e-24 | 12 | 140 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +G+rFhPt+ el+ ++Lk+ ++g++l+ e + ++ +diy Pw++ + ++ eek +fF++ +k++++ +r +r+ ++g+Wk + + ++++ XP_009590494.1 12 MGVRFHPTEAELI-NFLKRFLKGEPLPSECHnFQLADIYGDqPPWEIFGASDHpEEKVRFFFTRLKKQKSEHTRVRRTCANGTWKGQTSIDPIKN 105 7************.9**********77755559999***87368***743333255566************************************ PP NAM 95 kkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 kg++vg ++ + f + r+++ge + W+m+ey++ XP_009590494.1 106 GKGTVVGFRRCFKFQTSRSKEGEyNKIWLMKEYSV 140 ***************999999984567******86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-27 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.104 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-15 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MSTLPVRRGC IMGVRFHPTE AELINFLKRF LKGEPLPSEC HNFQLADIYG DQPPWEIFGA 60 SDHPEEKVRF FFTRLKKQKS EHTRVRRTCA NGTWKGQTSI DPIKNGKGTV VGFRRCFKFQ 120 TSRSKEGEYN KIWLMKEYSV RDDFFRENSI PKEDIVVCRI KKNIRAEKNY GVTMEEQDVA 180 KIIEAMLHEP DEDYCTTVQP APICQAENQV MDETQKMNEH NNSSYINDCS NYQEEIYWAD 240 DVLLDIDDFG DII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU753260 | 0.0 | EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590494.1 | 0.0 | PREDICTED: protein SOMBRERO-like | ||||
TrEMBL | A0A1S4CNS0 | 1e-174 | A0A1S4CNS0_TOBAC; protein SOMBRERO-like | ||||
STRING | XP_009590494.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-17 | NAC domain containing protein 2 |