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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009590362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39764.9 Da PI: 10.0701 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 286 | 331 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k a++L +Av+YIk+Lq XP_009590362.1 286 SIAERVRRTRISERMRKLQELVPNmE-----KQTKTADMLDLAVDYIKDLQ 331 689*********************44.....446679*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.71 | 280 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-15 | 283 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.85E-12 | 284 | 333 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-13 | 285 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-9 | 286 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 286 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MYGNSPAYTK TKEGLVLKKR EKQLNMESEY ANSNMRNSST TSGLLRFSSA PTSFLANFTD 60 KVVKNGNYKN GLGSKLNLGS SLGLNNSQLP PPYPRHNSIN GYRVVSSMEM DRQRQNKLGS 120 NLMRQNSSPA GLFSHLNSQN GSGVGGYRTV NGANGDTVSP SSLGMLSRIN EVENEISRLT 180 TSLGDDQSGN GNSETQYYNS GLPFASWSDF QESFTGHKRE MLDNEEKLFA NSQIGQLGNQ 240 TPILSHHLSL PKTPAEIAAM EKLLQLQEIV PCKIRAKRGC ATHPRSIAER VRRTRISERM 300 RKLQELVPNM EKQTKTADML DLAVDYIKDL QKQYKTLTDC RANCKCAAMQ KPVSNQRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009590362.1 | 0.0 | PREDICTED: transcription factor bHLH130-like isoform X1 | ||||
Swissprot | Q66GR3 | 9e-79 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A1S3Z701 | 0.0 | A0A1S3Z701_TOBAC; transcription factor bHLH130-like | ||||
STRING | XP_009590362.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5194 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-76 | bHLH family protein |
Publications ? help Back to Top | |||
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