PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 358aa    MW: 39764.9 Da    PI: 10.0701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12286331655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+       k    a++L +Av+YIk+Lq
  XP_009590362.1 286 SIAERVRRTRISERMRKLQELVPNmE-----KQTKTADMLDLAVDYIKDLQ 331
                     689*********************44.....446679*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.71280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15283345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.85E-12284333No hitNo description
Gene3DG3DSA:4.10.280.102.9E-13285342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-9286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MYGNSPAYTK TKEGLVLKKR EKQLNMESEY ANSNMRNSST TSGLLRFSSA PTSFLANFTD  60
KVVKNGNYKN GLGSKLNLGS SLGLNNSQLP PPYPRHNSIN GYRVVSSMEM DRQRQNKLGS  120
NLMRQNSSPA GLFSHLNSQN GSGVGGYRTV NGANGDTVSP SSLGMLSRIN EVENEISRLT  180
TSLGDDQSGN GNSETQYYNS GLPFASWSDF QESFTGHKRE MLDNEEKLFA NSQIGQLGNQ  240
TPILSHHLSL PKTPAEIAAM EKLLQLQEIV PCKIRAKRGC ATHPRSIAER VRRTRISERM  300
RKLQELVPNM EKQTKTADML DLAVDYIKDL QKQYKTLTDC RANCKCAAMQ KPVSNQRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590362.10.0PREDICTED: transcription factor bHLH130-like isoform X1
SwissprotQ66GR39e-79BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1S3Z7010.0A0A1S3Z701_TOBAC; transcription factor bHLH130-like
STRINGXP_009590362.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]