PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009590362.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 358aa MW: 39764.9 Da PI: 10.0701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009590362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.7e-12	286	331	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k a++L +Av+YIk+Lq XP_009590362.1 286 SIAERVRRTRISERMRKLQELVPNmE-----KQTKTADMLDLAVDYIKDLQ 331 689*******************44.....446679***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.71	280	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	283	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.85E-12	284	333	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-13	285	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-9	286	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-11	286	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MYGNSPAYTK TKEGLVLKKR EKQLNMESEY ANSNMRNSST TSGLLRFSSA PTSFLANFTD 60 KVVKNGNYKN GLGSKLNLGS SLGLNNSQLP PPYPRHNSIN GYRVVSSMEM DRQRQNKLGS 120 NLMRQNSSPA GLFSHLNSQN GSGVGGYRTV NGANGDTVSP SSLGMLSRIN EVENEISRLT 180 TSLGDDQSGN GNSETQYYNS GLPFASWSDF QESFTGHKRE MLDNEEKLFA NSQIGQLGNQ 240 TPILSHHLSL PKTPAEIAAM EKLLQLQEIV PCKIRAKRGC ATHPRSIAER VRRTRISERM 300 RKLQELVPNM EKQTKTADML DLAVDYIKDL QKQYKTLTDC RANCKCAAMQ KPVSNQRV

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MYGNSPAYTK TKEGLVLKKR EKQLNMESEY ANSNMRNSST TSGLLRFSSA PTSFLANFTD  60
KVVKNGNYKN GLGSKLNLGS SLGLNNSQLP PPYPRHNSIN GYRVVSSMEM DRQRQNKLGS  120
NLMRQNSSPA GLFSHLNSQN GSGVGGYRTV NGANGDTVSP SSLGMLSRIN EVENEISRLT  180
TSLGDDQSGN GNSETQYYNS GLPFASWSDF QESFTGHKRE MLDNEEKLFA NSQIGQLGNQ  240
TPILSHHLSL PKTPAEIAAM EKLLQLQEIV PCKIRAKRGC ATHPRSIAER VRRTRISERM  300
RKLQELVPNM EKQTKTADML DLAVDYIKDL QKQYKTLTDC RANCKCAAMQ KPVSNQRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009590362.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
Swissprot	Q66GR3	9e-79	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S3Z701	0.0	A0A1S3Z701_TOBAC; transcription factor bHLH130-like
STRING	XP_009590362.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]