PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009590020.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 339aa    MW: 37241 Da    PI: 5.0799
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009590020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-15159214358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     ++kr+rr ++NRe+ArrsR+RK+a ++ Le+ v++  +eN++L k+l   +++++ 
  XP_009590020.1 159 DIKRTRRQASNRESARRSRRRKQAHLADLENQVDQYRGENESLFKQLADATQQYKD 214
                     58******************************************888877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-16157221IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-11157213No hitNo description
PROSITE profilePS5021711.036159211IPR004827Basic-leucine zipper domain
PfamPF001701.2E-12160216IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-11160212No hitNo description
PROSITE patternPS000360164179IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEKKMANFAN IRDMKKSPSL LAFEEYFKTG DGFGGSDHHQ NTNNNNINDD DNNNNNVHAD  60
IFGDICSVAP SFNQEMVNGF SNCALTDKPL WSPNLTPKQS SISATVDSQS SICAGSPTPT  120
IMPKMKESQV MGATSGSYSD DDDVDAEVGP CEQSTDPLDI KRTRRQASNR ESARRSRRRK  180
QAHLADLENQ VDQYRGENES LFKQLADATQ QYKDALTNNR VLKSDVEALR AKVKLAEDMV  240
ARGSLTSTSL SHLLQNYLNT PQPLGTNNNN LCRLDNVSPT ITVPGEDAWS AISGQNPVIG  300
VENVNAFNRN FRNGGAMSDT VSCVSDVWSW ESHVPSISK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180RRSRRRKQ
2175180SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590020.10.0PREDICTED: basic leucine zipper 9
SwissprotQ6H5005e-66RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A1U7YD560.0A0A1U7YD56_NICSY; basic leucine zipper 9
STRINGXP_009590020.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-43basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]