PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009589948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 43268 Da PI: 6.0516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.6e-21 | 173 | 222 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a++k++g XP_009589948.1 173 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 222 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.45E-23 | 173 | 232 | No hit | No description |
SMART | SM00380 | 3.6E-39 | 173 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.673 | 173 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-33 | 173 | 231 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-23 | 173 | 231 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-14 | 173 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 174 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 196 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MCIYKVANSR DKISNRRRHE DWDRDDNYNM LESMFSGKIN REEEMSVMVS ALTHVVAGED 60 RLNHQILTDE NGAAENNLGS GFSAVSWGVG EKRGRNEEQS GHHFLHFGSS DIRSSGGQGT 120 SIRTITSSTP TTEATFIYTS TNDNQNSSSD QSSGGDNNNN NNNNNNNSQP KRRYRGVRQR 180 PWGKWAAEIR DPYKATRVWL GTFDTAEAAA RAYDEAALKF RGSKAKLNFP ENVKLLPSPV 240 LSDSPNTLYS VSSSPDPIVH TSLYRPNFIG YPLRDDEPIV HTSQYRSNFI ERPRTDEPIL 300 HTTHHQALNS SSTDLNAQIF TNDDEFLRLH VPYFPNMFLS PVQPDASQSE LVTEALAPPP 360 SQNSGTDFQT AASNWSNSAY DHPSSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-23 | 172 | 233 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT990489 | 6e-54 | CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence. | |||
GenBank | HG975443 | 6e-54 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 6e-54 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589948.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1S4DFC3 | 0.0 | A0A1S4DFC3_TOBAC; ethylene-responsive transcription factor ABR1-like | ||||
STRING | XP_009589948.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 8e-27 | ethylene response factor 110 |