PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589916.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BES1
Protein Properties Length: 665aa    MW: 74963.3 Da    PI: 5.99
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589916.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.21.2e-48552003143
          DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssasaspessl 94 
                     + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGttyr++  p+   ++a+  g  + +s+es++
  XP_009589916.1  55 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTYRQSPPPPnnnNAASCLGPYEVMSVESPV 149
                     789*******************************************************************999877667778899999******* PP

          DUF822  95 q.sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvl 143
                     + ssl+++++++ ++ + ++p+ ++++sp+s+dsi ++++ ++  +++s+ 
  XP_009589916.1 150 SgSSLRNCSTRASMDCQPSVPRINESLSPASFDSIVVTESdTKADKFTSTS 200
                     ************************************998853333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.2E-5055205IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.19E-155227659IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.8E-169229658IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.1E-84250634IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54266280IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54287305IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54309330IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54402424IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54475494IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54509525IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54526537IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54544567IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-54580602IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MNNLNPHHSI PNSQHPDPQF PNPNEDPNPN PPPQPQPRRP RGFAATNAAA GATNKSRKER  60
EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPVRADMN DVLAALARQA GWTVEPDGTT  120
YRQSPPPPNN NNAASCLGPY EVMSVESPVS GSSLRNCSTR ASMDCQPSVP RINESLSPAS  180
FDSIVVTESD TKADKFTSTS TMNSTECLEA GQLMQELHSG EHGIGLSGTQ YVPVFVMLSS  240
GLINNFCQLM DPDSVKQELQ QLKSLKIDGV VVNCWWGIVE SWVPQKYEWS GYRELFNIIQ  300
DFKLKLQVVM AFHENGGSDT SGMFISLPQW VLEIGKDNQD IFFTDRQGRR NTECLSWGID  360
KERVLRGRTA IEVYFDMMRS FRTEFDDLFA DGLISAVEIG LGASGELKYP SFSERMGWRY  420
PGIGEFQCYD KYSLQNLRKA ATSRGHSFWA KGPDNAGYYN SKPHETGFFC ERGDYDSYYG  480
RFFLHWYRQV LIDHADNVLS LATLAFEGVQ IVVKIPAIYW WYRTSSHAAE VTAGYYNPTN  540
QDGYSPVFEV LKKHSVTVKF ICSGFQVPET DDPLADPDGL SWQILNSAWD KALPVAGQNA  600
FPCYDREGLM KLVETAKPRN DPDHHLFTFL AFQQPLPLVQ SAICISELDY FIKSMHGEII  660
NNVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-12223161911401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589916.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S4AAY30.0A0A1S4AAY3_TOBAC; Beta-amylase
STRINGXP_009589916.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]