PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588924.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 533aa    MW: 59512.9 Da    PI: 7.3032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.49.6e-2297198199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd++++  l++ ++ a ++       ++k+ + +l+++d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+v+F +    +
  XP_009588924.1  97 FCKVLTASDTNSNWGLTVRREDAIKCfppldiTKQKPIQ-ELIVKDLNGSEWRFCHVFRGQPRRHLLTKGWSKFVASKKLVTGDSVIFLR--GGN 188
                     99****************************985555564.9************************************************4..378 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_009588924.1 189 GELCVGVRRQ 198
                     999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-3494211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2694198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-2196197No hitNo description
PROSITE profilePS5086312.09797199IPR003340B3 DNA binding domain
SMARTSM010192.5E-1897199IPR003340B3 DNA binding domain
PfamPF023623.8E-1997198IPR003340B3 DNA binding domain
PfamPF065079.3E-5222253IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MHVLDGLIIF HPEKLVFYGN NFTAGAVDLC SILGKRDIRI AYQSCSIRTK KIIHPWVEPD  60
TDEVYAHITL LPEENQSDQT TPDAWSPQPF NLQFQSFCKV LTASDTNSNW GLTVRREDAI  120
KCFPPLDITK QKPIQELIVK DLNGSEWRFC HVFRGQPRRH LLTKGWSKFV ASKKLVTGDS  180
VIFLRGGNGE LCVGVRRQAH GRHNIGSSPV SSQTVQGVLA VVSHAFATGS LFSVYYQPRK  240
SRFILSLNKY LEPNRAKPSN QNSAQIASNG LCTNQASVDD LDCDVFSDIF LAAHPLFLEN  300
TPEPNGNCVG VASTVQNFEG WPESQRESFT TYPQQPIPEP SVSTSTLQPT DTLQVMCTYS  360
TPRQLPTEGP GCGNEQVSWA GYQVAQRYVP ILSRVIMRYP STISGFKAIT GALQSVYLEM  420
LAKLVDLLEK SRIGSMDNRN QFQVIKQYLV DLKFIGIDIS WIETRLAQID GVLKMEKLIQ  480
HQHALAHRID ETQLTLGLLN QELGSVRKEL EELTPKVGPT PPSKDCSILE GLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-715725784287Auxin response factor 1
4ldw_A1e-715725784287Auxin response factor 1
4ldw_B1e-715725784287Auxin response factor 1
4ldx_A2e-715725784287Auxin response factor 1
4ldx_B2e-715725784287Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588924.10.0PREDICTED: uncharacterized protein LOC104086359
TrEMBLA0A1S4CT830.0A0A1S4CT83_TOBAC; Auxin response factor
STRINGXP_009588924.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-70auxin response factor 1