PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588921.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 296aa    MW: 32804.2 Da    PI: 8.6585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15.2e-15213267256
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                     ++ +r+rr++kNRe+A rsR+RK+a++ eLe  + +Le+eN+ L ke eel+   
  XP_009588921.1 213 AAMQRQRRMIKNRESAARSRERKQAYQVELESMAVKLEEENELLLKEKEELTRAH 267
                     5789********************************************9998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-10212274IPR004827Basic-leucine zipper domain
PfamPF001701.3E-13213268IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.024214265IPR004827Basic-leucine zipper domain
CDDcd147072.80E-13216243No hitNo description
SuperFamilySSF579595.79E-10216267No hitNo description
Gene3DG3DSA:1.20.5.1706.2E-13217270No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MASMKLMASS ASRNSDRRKS SASSSSSSST MPHDLQYSNN GSNNSSSNLE ATSVTPDLIF  60
RNVYGESHSN TLLNTEITLL DAAGAITPIS DSETPPATAV TASEVPPVRR TVDDVWREIV  120
EGKREKQRAA VVAGCKEEMM TLEDFLVKAG AVEEEAVAPV QGPEVKVELG TERLSGGIFA  180
FDHSTPYMAT PQQSVPGFGR GKRKAVLEPL DKAAMQRQRR MIKNRESAAR SRERKQAYQV  240
ELESMAVKLE EENELLLKEK EELTRAHYKQ LIEKVIPVVD KRKPPRVLRR VCSMQW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588921.10.0PREDICTED: G-box-binding factor 4-like
RefseqXP_016486649.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427771e-46GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1S4BCM70.0A0A1S4BCM7_TOBAC; G-box-binding factor 4-like
STRINGXP_009588921.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.15e-40bZIP family protein