PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009588830.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1001aa MW: 109480 Da PI: 5.9405

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009588830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_009588830.1 595 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.188	578	666	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	599	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	898	984	No hit	No description
SMART	SM00666	1.1E-23	901	983	IPR000270	PB1 domain
Pfam	PF00564	7.6E-19	901	982	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-24	901	983	No hit	No description
PROSITE profile	PS51745	20.581	901	983	IPR000270	PB1 domain
CDD	cd06407	3.54E-33	902	982	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MERGVGLWAS PRGQMEGVVA FDAGARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF 60 ASYAAFSQIN SMSQSYAPFE GLSYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDGQLH 120 FVVDSTDGVG LVAKRSKNSS QQADDADIDN SMIVRSPSQP LAERMLRALA MFKESSGAGI 180 LAQVWIPMKN KDRYILSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN 300 FDLEMDHVCR ALKAVNLRSI APPRLHSQSL SKNQRAALAE ITDVLRAVCH AHKLPLALTW 360 IPCSVTEGEG DESIRVLARG CNASSNEKCV LCAEDTACYA SDKEMQGFVH ACMEHYLEEG 420 EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF 480 FLPISMKGST EQQLLLNNLS GTMQRICRSL RTVSDAELVG QGATFGLQDG FAPNLPPITL 540 SRRNSQHSLD SNSNSVSVAP LGVSDSKSAG MQADGSREQT MIGSRRQMEK KRSTAEKHVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV 660 QGVEGGLKFD PATGGLVPAS FIIQDFDAQQ SIFFPCKDVS VKNPNSVFQD AVSVPSTSGI 720 DKENSMVKME EDSYVDGNQL GQSNYINTSS FKGGNKSSIP VSGFCYEPKL AALDAMSSRP 780 ASRTMPLTNS RNASLGSFHT KEGCRRWGLD NDTLDNFECH FTSRCSYSKA AGGDGDTKMK 840 GDNEMDGDGG VIEHNQASSS AMTDSSNGSE SMMNGSSSSS RSRGARNHSK VEANFGDSGS 900 TITVKATYKE DTTRFKFEPS AGCFQLYEEV AKRFKLQTGT FQLKYLDDEE EWVMLVNDAD 960 LHECLEILDF VGGRTIKFLV RDTPYAMGSS GSSNCLLGSG S

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MERGVGLWAS PRGQMEGVVA FDAGARSSNV DDSFNNVMEI MNLDAYTGWC TSPSAAEQMF  60
ASYAAFSQIN SMSQSYAPFE GLSYTEQNTG TFPPMDANMV GSTVCGGEKM MFGQNDGQLH  120
FVVDSTDGVG LVAKRSKNSS QQADDADIDN SMIVRSPSQP LAERMLRALA MFKESSGAGI  180
LAQVWIPMKN KDRYILSTCE QPYLLDQALS GYREVSRKFT FDAETKPGSI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVNHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN  300
FDLEMDHVCR ALKAVNLRSI APPRLHSQSL SKNQRAALAE ITDVLRAVCH AHKLPLALTW  360
IPCSVTEGEG DESIRVLARG CNASSNEKCV LCAEDTACYA SDKEMQGFVH ACMEHYLEEG  420
EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF  480
FLPISMKGST EQQLLLNNLS GTMQRICRSL RTVSDAELVG QGATFGLQDG FAPNLPPITL  540
SRRNSQHSLD SNSNSVSVAP LGVSDSKSAG MQADGSREQT MIGSRRQMEK KRSTAEKHVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV  660
QGVEGGLKFD PATGGLVPAS FIIQDFDAQQ SIFFPCKDVS VKNPNSVFQD AVSVPSTSGI  720
DKENSMVKME EDSYVDGNQL GQSNYINTSS FKGGNKSSIP VSGFCYEPKL AALDAMSSRP  780
ASRTMPLTNS RNASLGSFHT KEGCRRWGLD NDTLDNFECH FTSRCSYSKA AGGDGDTKMK  840
GDNEMDGDGG VIEHNQASSS AMTDSSNGSE SMMNGSSSSS RSRGARNHSK VEANFGDSGS  900
TITVKATYKE DTTRFKFEPS AGCFQLYEEV AKRFKLQTGT FQLKYLDDEE EWVMLVNDAD  960
LHECLEILDF VGGRTIKFLV RDTPYAMGSS GSSNCLLGSG S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588830.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009588831.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009588832.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009588834.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U7XXY1	0.0	A0A1U7XXY1_NICSY; protein NLP9-like
STRING	XP_009588830.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]