PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009588673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 320aa MW: 35894.7 Da PI: 6.7721 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.5e-24 | 50 | 94 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e+ XP_009588673.1 50 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMNRGRNRSRKHVES 94 79****************************************986 PP | |||||||
2 | QLQ | 40.6 | 7.7e-15 | 17 | 38 | 2 | 23 |
QLQ 2 aFTaaQlqlLksQilAyKyLaa 23 +FTa Q+q+L++Q+++yKyL+a XP_009588673.1 17 PFTAVQWQELEHQAMIYKYLVA 38 9*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08880 | 1.1E-9 | 17 | 38 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 50 | 94 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-20 | 51 | 93 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MSGTTTRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAVG YCSYYGKKFD PEPGRCRRTD 60 GKKWRCSKDA YPDSKYCERH MNRGRNRSRK HVESQSTSQS LLTSMSNNAT GSSKISGNFQ 120 ISSSGSLQNM PLYSAAYSEE PNYGSTGMKT QMEPVSYGVD NKAYRYFHGM AVDADEQNFS 180 LEASASMRSL GMGSNADSTW CLTPQLPSNP MVKPKNDTQL LYDSPQTRLP HPFEPVIDAT 240 ISKQQQHCFF DSDIGSPGTV KQEERSMRPF FDEWPTAKES WSNLDDEGSN KNNFSSTQLS 300 ISIPMAPSDF SRSSCSPNDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-111 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018622847.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X2 | ||||
TrEMBL | A0A1S3Z2Q6 | 0.0 | A0A1S3Z2Q6_TOBAC; growth-regulating factor 4-like isoform X2 | ||||
STRING | XP_009588672.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-35 | growth-regulating factor 5 |