PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009588672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 348aa MW: 39053.3 Da PI: 6.929 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 2.9e-24 | 78 | 122 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e+ XP_009588672.1 78 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMNRGRNRSRKHVES 122 79****************************************986 PP | |||||||
2 | QLQ | 65.4 | 1.3e-22 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a+ PvPp+L+++iq+ XP_009588672.1 17 PFTAVQWQELEHQAMIYKYLVAGIPVPPDLVLPIQR 52 9*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.7E-13 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.4E-17 | 17 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.585 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.6E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSGTTTRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAGI PVPPDLVLPI QRSFETISAR 60 FFHHTSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMN RGRNRSRKHV 120 ESQSTSQSLL TSMSNNATGS SKISGNFQIS SSGSLQNMPL YSAAYSEEPN YGSTGMKTQM 180 EPVSYGVDNK AYRYFHGMAV DADEQNFSLE ASASMRSLGM GSNADSTWCL TPQLPSNPMV 240 KPKNDTQLLY DSPQTRLPHP FEPVIDATIS KQQQHCFFDS DIGSPGTVKQ EERSMRPFFD 300 EWPTAKESWS NLDDEGSNKN NFSSTQLSIS IPMAPSDFSR SSCSPNDV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-111 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588672.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_018622846.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
TrEMBL | A0A1S3Z3A4 | 0.0 | A0A1S3Z3A4_TOBAC; growth-regulating factor 4-like isoform X1 | ||||
STRING | XP_009588672.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-51 | growth-regulating factor 5 |