PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009588533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 245aa MW: 28095.9 Da PI: 6.2629 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 36 | 87 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ +q+ +WFqNrRa++k XP_009588533.1 36 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPKQIAIWFQNRRARWK 87 57899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 9.9e-40 | 34 | 125 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rrl+ eqvk+LE++Fe +kLeperK++lar+Lglqp+q+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L +++++L++++++ XP_009588533.1 34 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPKQIAIWFQNRRARWKTKQLEKDYDVLKRQLEAVKAENDSLLAHNQKLHAKIMA 125 669************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 26 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-16 | 32 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-14 | 33 | 90 | No hit | No description |
Pfam | PF00046 | 4.3E-15 | 36 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 37 | 96 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-14 | 89 | 128 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSFSGMEANN NCEENHEEED LCDDGLHEAA REKKIRRLNM EQVKTLEKNF ELGNKLEPER 60 KMQLARALGL QPKQIAIWFQ NRRARWKTKQ LEKDYDVLKR QLEAVKAEND SLLAHNQKLH 120 AKIMALKSGE QPTELSINLN KETEGSSSEN SSEMMKLDST MTAAAIDGPL ILVSTAHQPI 180 TRGSRLLFPP PVRPNGVAQL FQRQQVLQSD MKLMDQTVKQ ETLSNMFVDD QSPGFWPWLE 240 QPHFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240202 | 2e-62 | AC240202.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-227k19 map 1, complete sequence. | |||
GenBank | AC245835 | 2e-62 | AC245835.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-8i3 map 1, complete sequence. | |||
GenBank | AC246709 | 2e-62 | AC246709.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58g10 map 1, complete sequence. | |||
GenBank | HG975440 | 2e-62 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 2e-62 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588531.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Refseq | XP_009588533.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Swissprot | Q8LC03 | 7e-73 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1S3Z4I5 | 1e-180 | A0A1S3Z4I5_TOBAC; homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
STRING | XP_009588530.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 5e-66 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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