PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009588494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 206aa MW: 23983.5 Da PI: 9.9359 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106 | 3e-33 | 31 | 131 | 2 | 103 |
HHHHHHHHHC........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeile........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+ye+le + +++isw+e+g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++ weF+h++Fk+ XP_009588494.1 31 FLLKTYELLEfveeeeenYSGKNKVISWNEEGTGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFSHEKFKR 116 99*******999887554447899*************************************************999.........********** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll ki rkks+ XP_009588494.1 117 GSKHLLGKITRKKSD 131 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.4E-35 | 24 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-42 | 27 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.36E-27 | 28 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-29 | 31 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-10 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-10 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAAAAVGTAE DRTISRKIGQ PPTRTKCPAP FLLKTYELLE FVEEEEENYS GKNKVISWNE 60 EGTGFVVWSP AEFSELMLPK YFKHNNFSSF IRQLNTYGFK KVASKRWEFS HEKFKRGSKH 120 LLGKITRKKS DSSAFPAYLK PSDHIMAAKE ENNITLQLLM EENQNLRKER LELQMQIAHF 180 KTLETKLMDC LSQYVGNQHN KVRRLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hks_A | 2e-17 | 25 | 128 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
1hkt_A | 2e-17 | 25 | 128 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588494.1 | 1e-153 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Refseq | XP_016448505.1 | 1e-153 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A1S3Y8P8 | 1e-152 | A0A1S3Y8P8_TOBAC; heat stress transcription factor B-2a-like | ||||
STRING | XP_009588494.1 | 1e-153 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 5e-41 | heat shock transcription factor B2A |