PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588428.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 539aa    MW: 60019.6 Da    PI: 8.5173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-1718981298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     s  l +p kf+++++gk   s t  l  +sg+sW + l   +++++ ++ +GW + vk++ L++gD +vF++dg+  f  +v +f+
  XP_009588428.1 18 HSETLKIPSKFIKHMEGKA--SGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASLVKDHCLESGDALVFRYDGDLHF--TVLAFD 98
                    56679*******7777774..449***************..99999***************************997666..787776 PP
2B355.69.8e-18236330198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n++  gD+++F+l+++ e  l+v
  XP_009588428.1 236 FTKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIYLGDICIFELVRKCE--LRV 326
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_009588428.1 327 HVLR 330
                     8877 PP
3B347.82.5e-154315131297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s  l +p +f  eh   +++ ++++l++++g  W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  XP_009588428.1 431 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGDCWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 513
                     5567899****99996..45889****************8888887789999*********************998..566688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-224101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-16798No hitNo description
PROSITE profilePS5086313.2817100IPR003340B3 DNA binding domain
SMARTSM010197.8E-129100IPR003340B3 DNA binding domain
PfamPF023627.9E-151699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-23228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-24229331IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-20234330No hitNo description
PROSITE profilePS5086313.789236332IPR003340B3 DNA binding domain
PfamPF023623.3E-15236330IPR003340B3 DNA binding domain
SMARTSM010193.4E-15236332IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22415513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-23415513IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-19418513No hitNo description
PROSITE profilePS5086312.633420516IPR003340B3 DNA binding domain
SMARTSM010194.6E-11420516IPR003340B3 DNA binding domain
PfamPF023629.4E-13423513IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MWDARRPHFL VGFNPSIHSE TLKIPSKFIK HMEGKASGTA FLVGPSGNSW PMDLIQQDDG  60
LFFHNGWASL VKDHCLESGD ALVFRYDGDL HFTVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLECVVE GVPKKMRSTQ IPSECTAEDA VCSNGRIYAS SFLNEMENAG  180
NASSNTVTIA VPSQTEIVCS NSEVKTGNGT SEEPMWLSAQ EAEKVARSFT SSFPNFTKVM  240
KRFNVSGSYT LNIPYQFATE HLPKCKVKIL LHNLKGKTWT VNSIPTTRVQ TSHTFCGGWL  300
SFVRDNNIYL GDICIFELVR KCELRVHVLR VEKEGNDYSS KQVAKAKTFA KKGSAHGKEK  360
HSNMLKSHQL CLSKISSGDS VIRKPAQDKQ GSFTKSCMSM KSVPEEKLAA ESFISNFPHF  420
VRIMKKFNIS GSYTLKVPYQ FSMEHLPNCR TEIVLRNLKG DCWTVNSIPT MKVQTLHTFC  480
GGWSAFVRDN DIQMGDICIF ELVGKYEMRV HICAIGKKGL DYRNGITSNE SAILASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-135CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-135HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-135HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588428.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009588429.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009588430.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1S3XLE60.0A0A1S3XLE6_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_009588428.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein