PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009588379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 218aa MW: 24588.8 Da PI: 9.723 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.6 | 9.9e-17 | 150 | 207 | 4 | 62 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++r rrk+kNRe+A rsR+RK+a++ eL +kv Le+eN++Lkke +el+k+ ++l se XP_009588379.1 150 DRRLRRKIKNRESAARSRARKQAYQNELVNKVSHLEEENMKLKKE-KELEKMLSELSSE 207 789****************************************76.8999999999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-13 | 146 | 204 | No hit | No description |
SMART | SM00338 | 1.1E-12 | 147 | 206 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 149 | 194 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.8E-14 | 150 | 207 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 7.27E-17 | 151 | 188 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-11 | 151 | 197 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 154 | 169 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
QFPVFFSLIH PLLLPDLNQF AGVDIDNTSP TTSFQHQASL TLAKAISSNT VDKVWRDIQQ 60 GQTVRNLDGM NDQERKPTLG ETTLEDYLVK AGLFSADASL GHTMSLDNPT AVQNFVPPIG 120 LSPSPSIDAL SDTPFSGRKR HATDIDKTLD RRLRRKIKNR ESAARSRARK QAYQNELVNK 180 VSHLEEENMK LKKEKELEKM LSELSSEPRY QLRRTSSI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-121 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258990.1 | 1e-126 | PREDICTED: LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2, partial | ||||
Swissprot | Q9C5Q2 | 4e-40 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A314LG83 | 1e-85 | A0A314LG83_NICAT; Abscisic acid-insensitive 5-like protein 2 | ||||
STRING | XP_009588379.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12596 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41070.3 | 7e-30 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|