PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588142.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 326aa    MW: 36787.5 Da    PI: 7.7173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588142.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.89.4e-3362167199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k ltpsdv+k++rlv+pk++ae+h       + + e+++ l +ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gDfv+F++++ +
  XP_009588142.1  62 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngtqNDSGEKGFLLNFEDELGKLWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDFVLFERHRLD 156
                     99***************************999844445899*************************************************75448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + + +++++r+
  XP_009588142.1 157 GDRTFIGWRRR 167
                     88899999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-4053171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3158165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-3060157No hitNo description
PROSITE profilePS5086314.00162168IPR003340B3 DNA binding domain
PfamPF023627.3E-3062168IPR003340B3 DNA binding domain
SMARTSM010191.6E-2662168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSINHCSSQL TEPFWCTTKQ HYIMESTRKS SSPTYKNQTT PTSLCPNSNR LEENEIPKER  60
LFEKPLTPSD VGKLNRLVIP KQHAEKHFPL NGTQNDSGEK GFLLNFEDEL GKLWTFRYSY  120
WNSSQSYVLT KGWSRFVKEK KLDAGDFVLF ERHRLDGDRT FIGWRRRNAA AGATVLEQES  180
GIAPPGGGGG GWGQVYYGGS GHPYPSAGVP YQPDCLHAVR RTMHNQTAAN GNNTRRQVRL  240
FGVNLAECEV DESLWSEPST SDGSSTPSHH QQSHEYQGQA GQLHYQYQVH CSNPSAPASS  300
HAKNNHHNNM DVDYSSDMNH MRYHQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-46581674113B3 domain-containing transcription factor NGA1
5os9_B2e-46581674113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588142.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ26e-63Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A1S4A2920.0A0A1S4A292_TOBAC; B3 domain-containing protein At2g36080-like
STRINGXP_009588142.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]