PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587945.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 707aa    MW: 81415.5 Da    PI: 6.6849
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.6e-08711194491
            FAR1  44 ekkktekerrtra.etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +k++  + r+t+  ++  +Cka++   ++++g w+v+k++++HnH+l p
  XP_009587945.1  71 DKDSLARIRKTKFtTKSNNCKARVATVLDDSGCWRVSKVVHDHNHDLLP 119
                     4444445555554055679***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.2E-676119IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20240322IPR018289MULE transposase domain
PROSITE profilePS509669.742453489IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011464491IPR006564Zinc finger, PMZ-type
PfamPF044341.9E-4465488IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MTSDDSLLNE YKWVDDDDEE PDGEYYGEAD DDEEQVLGNE LGLCDVDREM ENEFTKEDVV  60
VGPISGIRFS DKDSLARIRK TKFTTKSNNC KARVATVLDD SGCWRVSKVV HDHNHDLLPS  120
ISRLMAGHRS VCDSLKRDLV AHDRSGIRPS KNIRLAEVQR GGPQNLGCTP KDCRNFILKS  180
RNFEMQEGDA QSLLNFFREM QVKDREFFYS IDVDNIGRLQ NVVWVHSHCK GAYEQFHDAI  240
CFDTTYLVNR YNMPCSTFVG INHHRQSILL GCSLMSHEDI DSYKLVFKTW LEAIGNVHPD  300
AIITESIKRA IAEVMPNIIH NITVEVFERK WTEYIARYNL HTRNWFNKLY SEKEKWIPVY  360
LDVYFWAGML STQRSEGMYA FFDGYITRQS TLKIFANQYE LAIRAKHEKE LEAEYRSKGF  420
QIVCESMFKW GEQAIQCYTH TVFKKNDGKP VDYNIEYTPI GDYFSCSCKW FESRGILCCH  480
ILKILSNKKT DKIDERYILT RWRSDIIRPH LNRFHQVGYI NMIPEYKIYR SMLKYFDIAC  540
DIALGTSVKI QYVKHNLKKM VYDLQNWEDE MIVPNANQDD SNETDGTTLR DSQDTRSRGR  600
LCLHRYRGII EYYFTSSQPR GLFGASNDAR TGVRGGGRDG GRIGGSGSGN RGGRGASRSG  660
KHRGRGNGQG RGTNIEHDSS LGVNEQIDAT QSQSSLFDLN SDPDLEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-36HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587945.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3YHD50.0A0A1S3YHD5_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009587945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-70FAR1 family protein